Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2979

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11346 and 11347 overlap by 4 nucleotides mRNA_2978: 11346 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 699,095 to 700,907 11346 mRNA_2979: 11347 - Hypothetical Protein, at 700,904 to 702,212 11347

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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700,062 + 11346 mRNA_2978 0.53 -0.6
700,083 + 11346 mRNA_2978 0.54 -1.1
700,299 + 11346 mRNA_2978 0.66 -0.6
700,398 + 11346 mRNA_2978 0.72 -1.9
700,469 - 11346 mRNA_2978 0.76 -0.1
700,470 - 11346 mRNA_2978 0.76 -0.8
700,470 - 11346 mRNA_2978 0.76 -0.2
700,478 - 11346 mRNA_2978 0.76 -3.0
700,581 - 11346 mRNA_2978 0.82 -1.3
700,607 - 11346 mRNA_2978 0.83 -0.2
700,611 + 11346 mRNA_2978 0.84 -0.4
700,611 + 11346 mRNA_2978 0.84 +0.2
700,619 - 11346 mRNA_2978 0.84 +0.5
700,800 - +0.3
700,827 + +1.4
700,907 + +1.2
700,908 + -0.3
700,922 + -0.9
700,924 - +0.2
701,072 - 11347 mRNA_2979 0.13 -1.9
701,222 + 11347 mRNA_2979 0.24 +0.8
701,276 - 11347 mRNA_2979 0.28 -1.0
701,406 + 11347 mRNA_2979 0.38 +0.6
701,457 - 11347 mRNA_2979 0.42 +1.1
701,468 - 11347 mRNA_2979 0.43 -0.6
701,468 - 11347 mRNA_2979 0.43 -0.5
701,471 - 11347 mRNA_2979 0.43 -0.1
701,503 - 11347 mRNA_2979 0.46 +0.1
701,511 - 11347 mRNA_2979 0.46 -1.2
701,517 + 11347 mRNA_2979 0.47 -0.0
701,517 - 11347 mRNA_2979 0.47 +1.4
701,597 - 11347 mRNA_2979 0.53 +1.3
701,602 - 11347 mRNA_2979 0.53 +1.4
701,617 + 11347 mRNA_2979 0.54 -0.5
701,656 - 11347 mRNA_2979 0.57 +0.9
701,665 - 11347 mRNA_2979 0.58 +1.0
701,668 - 11347 mRNA_2979 0.58 -0.0
701,697 - 11347 mRNA_2979 0.61 +1.2
701,738 - 11347 mRNA_2979 0.64 +0.8
701,765 - 11347 mRNA_2979 0.66 -0.5
701,822 - 11347 mRNA_2979 0.70 -0.4
701,823 - 11347 mRNA_2979 0.70 -0.6
701,871 - 11347 mRNA_2979 0.74 +0.6
701,892 + 11347 mRNA_2979 0.75 -0.3
701,906 - 11347 mRNA_2979 0.77 -1.2
701,944 + 11347 mRNA_2979 0.79 +1.0
701,960 - 11347 mRNA_2979 0.81 -1.7
702,028 - 11347 mRNA_2979 0.86 +0.5
702,037 - 11347 mRNA_2979 0.87 -0.6
702,059 + 11347 mRNA_2979 0.88 +0.1
702,062 + 11347 mRNA_2979 0.88 -0.2
702,065 - 11347 mRNA_2979 0.89 -0.5
702,070 - 11347 mRNA_2979 0.89 -0.9
702,090 + -0.3
702,147 - -2.4
702,194 + +0.4
702,218 + -0.3
702,220 - +2.0
702,256 - +1.0
702,256 - +0.4
702,258 - -0.7
702,263 - -0.6
702,263 - -0.2
702,263 - +1.3
702,273 + -0.6
702,276 - -0.4
702,276 - -0.5
702,276 - +1.5
702,276 - -0.8
702,276 - +2.0
702,286 - +0.6
702,290 - +0.4
702,308 - -0.8

Or see this region's nucleotide sequence