Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2996

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11363 and 11364 are separated by 115 nucleotides11364 and 11365 are separated by 173 nucleotides mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34,550 to 37,704 11363 mRNA_2996: 11364 - Hypothetical Protein, at 37,820 to 39,043 11364 mRNA_2997: 11365 - K14768 UTP7, WDR46 U3 small nucleolar RNA-associated protein 7, at 39,217 to 41,331 11365

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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36,821 + 11363 mRNA_2995 0.72 +2.7
36,821 + 11363 mRNA_2995 0.72 -0.5
36,825 - 11363 mRNA_2995 0.72 +1.4
36,856 - 11363 mRNA_2995 0.73 +1.0
37,048 - 11363 mRNA_2995 0.79 +1.6
37,381 + 11363 mRNA_2995 0.90 +0.6
37,649 + +1.9
37,733 - +0.7
37,778 - +1.7
39,055 - +0.3
39,066 + +1.7
39,201 - -0.4
39,202 + +0.0
39,208 + -0.4
39,237 - +2.2

Or see this region's nucleotide sequence