Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3032

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11399 and 11400 are separated by 433 nucleotides11400 and 11401 are separated by 524 nucleotides mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138,430 to 140,039 11399 mRNA_3032: 11400 - K09489 HSPA4 heat shock 70kDa protein 4, at 140,473 to 143,328 11400 mRNA_3033: 11401 - BLAST related to transcription factor medusa [Melanopsichiu..., at 143,853 to 146,672 11401

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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139,533 + 11399 mRNA_3031 0.69 +1.8
140,087 - -0.3
140,093 - +1.4
140,254 + -0.2
140,375 + +0.8
142,321 + 11400 mRNA_3032 0.65 -0.5
143,385 - -0.0
143,400 + +1.2
143,402 - +0.9
143,503 - +0.5
143,514 - -0.4
143,514 - +0.9
143,526 + +1.4
143,528 + +0.2
143,535 + -0.4
143,689 + +0.7
143,696 + +0.5
143,712 - -0.2
143,853 + -1.1
143,905 + -1.5
143,983 - +0.9
143,997 - -0.5
144,100 - -1.4
144,253 - 11401 mRNA_3033 0.14 -0.7

Or see this region's nucleotide sequence