Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3043

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11410 and 11411 are separated by 303 nucleotides mRNA_3042: 11410 - KOG0252 Inorganic phosphate transporter, at 172,633 to 175,207 11410 mRNA_3043: 11411 - K18159 NDUFAF1, CIA30 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1, at 175,511 to 176,675 11411

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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175,031 + -1.3
175,070 + -0.4
175,347 + +0.4
175,457 - +0.4
175,462 - +0.9
175,468 - -0.6
175,491 - -1.5
176,758 + -0.1
176,899 - -0.3
176,910 + +0.6
176,932 + +0.1
176,938 - +0.4
177,075 - -0.1
177,089 + +0.3
177,250 + -0.5
177,395 + +0.9
177,417 + -0.1
177,542 + +1.5
177,663 + -0.1

Or see this region's nucleotide sequence