Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3052

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11419 and 11420 are separated by 494 nucleotides11420 and 11421 are separated by 699 nucleotides mRNA_3051: 11419 - Hypothetical Protein, at 198,929 to 201,085 11419 mRNA_3052: 11420 - KOG2404 Fumarate reductase, flavoprotein subunit, at 201,580 to 204,661 11420 mRNA_3053: 11421 - K06889 K06889 uncharacterized protein, at 205,361 to 206,848 11421

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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200,775 - 11419 mRNA_3051 0.86 +0.4
201,924 + 11420 mRNA_3052 0.11 +0.6
202,205 - 11420 mRNA_3052 0.20 +0.4
202,319 + 11420 mRNA_3052 0.24 -0.9
202,536 - 11420 mRNA_3052 0.31 +0.1
202,544 + 11420 mRNA_3052 0.31 -0.2
202,717 - 11420 mRNA_3052 0.37 -0.1
202,811 - 11420 mRNA_3052 0.40 -1.0
202,954 - 11420 mRNA_3052 0.45 +1.1
202,967 - 11420 mRNA_3052 0.45 +1.0
203,010 - 11420 mRNA_3052 0.46 -2.4
203,090 - 11420 mRNA_3052 0.49 -2.3
203,364 + 11420 mRNA_3052 0.58 +0.3
203,854 - 11420 mRNA_3052 0.74 +1.4
203,879 - 11420 mRNA_3052 0.75 -2.3
203,980 + 11420 mRNA_3052 0.78 -0.9
203,993 + 11420 mRNA_3052 0.78 +0.8
204,138 - 11420 mRNA_3052 0.83 +0.6
204,225 + 11420 mRNA_3052 0.86 +0.0
204,292 + 11420 mRNA_3052 0.88 -2.2
204,330 + 11420 mRNA_3052 0.89 -1.2
204,335 + 11420 mRNA_3052 0.89 -0.9
204,341 + 11420 mRNA_3052 0.90 -0.1
204,346 + 11420 mRNA_3052 0.90 +0.2
204,386 - +0.3
204,389 - +0.1
204,390 + -0.1
204,393 - -0.3
204,396 + -0.9
204,398 - -1.4
204,399 - +1.8
204,404 - +1.2
204,411 + -0.2
204,411 - +2.0
204,412 + -0.1
204,412 - +0.6
204,427 - -0.2
204,428 + -0.8
204,436 - -0.2
204,438 - -0.6
204,463 + -1.0
204,479 + -0.5
204,531 - -0.5
204,534 - +0.2
204,544 - -2.0
204,547 + -0.3
204,553 - -1.4
204,575 - +0.5
204,692 + +2.0
204,728 + -1.8
204,868 + +1.0
204,881 - -0.1
204,890 + -0.1
204,900 + -1.4
204,904 + -1.4
204,998 + +0.2
205,022 - -0.6
205,028 - -0.1
205,028 - -2.6
205,029 + +0.5
205,043 - +1.9
205,047 + +0.6
205,047 + -0.2
205,050 - +2.3
205,051 - +0.4
205,054 + +0.5
205,056 + +0.3
205,057 - +1.0
205,062 + +1.3
205,067 + +2.0
205,068 + +0.0
205,068 + -1.8
205,068 + +0.3
205,070 + -0.6
205,070 + +0.2
205,076 + +1.3
205,077 + -4.0
205,081 + +0.5
205,088 - +0.5
205,091 + +0.3
205,091 - +0.5
205,094 + +0.3
205,104 - -1.3
205,104 + +1.2
205,136 - -0.1
205,144 + +0.2
205,147 - -0.3
205,157 - -0.4
205,158 - +0.0
205,159 - +0.7
205,163 - +0.0
205,269 - -0.0
205,285 - +0.0
205,310 - +2.0
205,312 - +0.6
205,326 - +0.3
205,329 - -0.4
205,330 + -0.4
205,589 - 11421 mRNA_3053 0.15 -0.5
205,592 - 11421 mRNA_3053 0.16 +1.1
205,594 + 11421 mRNA_3053 0.16 +0.6
205,595 + 11421 mRNA_3053 0.16 +1.2
205,597 + 11421 mRNA_3053 0.16 +0.2
205,612 + 11421 mRNA_3053 0.17 +0.1

Or see this region's nucleotide sequence