Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3053

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11420 and 11421 are separated by 699 nucleotides11421 and 11422 are separated by 421 nucleotides mRNA_3052: 11420 - KOG2404 Fumarate reductase, flavoprotein subunit, at 201,580 to 204,661 11420 mRNA_3053: 11421 - K06889 K06889 uncharacterized protein, at 205,361 to 206,848 11421 mRNA_3054: 11422 - Hypothetical Protein, at 207,270 to 207,722 11422

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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204,386 - +0.3
204,389 - +0.1
204,390 + -0.1
204,393 - -0.3
204,396 + -0.9
204,398 - -1.4
204,399 - +1.8
204,404 - +1.2
204,411 + -0.2
204,411 - +2.0
204,412 + -0.1
204,412 - +0.6
204,427 - -0.2
204,428 + -0.8
204,436 - -0.2
204,438 - -0.6
204,463 + -1.0
204,479 + -0.5
204,531 - -0.5
204,534 - +0.2
204,544 - -2.0
204,547 + -0.3
204,553 - -1.4
204,575 - +0.5
204,692 + +2.0
204,728 + -1.8
204,868 + +1.0
204,881 - -0.1
204,890 + -0.1
204,900 + -1.4
204,904 + -1.4
204,998 + +0.2
205,022 - -0.6
205,028 - -0.1
205,028 - -2.6
205,029 + +0.5
205,043 - +1.9
205,047 + +0.6
205,047 + -0.2
205,050 - +2.3
205,051 - +0.4
205,054 + +0.5
205,056 + +0.3
205,057 - +1.0
205,062 + +1.3
205,067 + +2.0
205,068 + +0.0
205,068 + -1.8
205,068 + +0.3
205,070 + -0.6
205,070 + +0.2
205,076 + +1.3
205,077 + -4.0
205,081 + +0.5
205,088 - +0.5
205,091 + +0.3
205,091 - +0.5
205,094 + +0.3
205,104 - -1.3
205,104 + +1.2
205,136 - -0.1
205,144 + +0.2
205,147 - -0.3
205,157 - -0.4
205,158 - +0.0
205,159 - +0.7
205,163 - +0.0
205,269 - -0.0
205,285 - +0.0
205,310 - +2.0
205,312 - +0.6
205,326 - +0.3
205,329 - -0.4
205,330 + -0.4
205,589 - 11421 mRNA_3053 0.15 -0.5
205,592 - 11421 mRNA_3053 0.16 +1.1
205,594 + 11421 mRNA_3053 0.16 +0.6
205,595 + 11421 mRNA_3053 0.16 +1.2
205,597 + 11421 mRNA_3053 0.16 +0.2
205,612 + 11421 mRNA_3053 0.17 +0.1
205,784 + 11421 mRNA_3053 0.28 +1.7
205,904 - 11421 mRNA_3053 0.36 +0.2
205,906 + 11421 mRNA_3053 0.37 -0.4
206,059 - 11421 mRNA_3053 0.47 +0.2
206,140 + 11421 mRNA_3053 0.52 +0.0
206,322 - 11421 mRNA_3053 0.65 -0.5
206,341 + 11421 mRNA_3053 0.66 +1.4
206,477 - 11421 mRNA_3053 0.75 +0.2
206,496 + 11421 mRNA_3053 0.76 +0.1
206,612 + 11421 mRNA_3053 0.84 -1.9
206,617 - 11421 mRNA_3053 0.84 -0.0
206,718 + +0.5
206,769 - +1.0
206,907 - +0.1
206,912 - +0.3
206,922 + +1.4
206,931 - -0.1
206,938 - +0.8
206,957 + +0.9
206,961 - +0.2
206,971 - +0.2
207,041 - -0.1
207,148 + +0.4
207,238 - -0.2
207,382 + 11422 mRNA_3054 0.25 +0.8
207,382 - 11422 mRNA_3054 0.25 +0.8
207,643 - 11422 mRNA_3054 0.82 +0.8
207,643 - 11422 mRNA_3054 0.82 +0.4
207,818 + +1.1

Or see this region's nucleotide sequence