Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3058

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11425 and 11426 are separated by 300 nucleotides mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214,961 to 216,563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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213,989 - 11425 mRNA_3057 0.72 -0.5
213,994 + 11425 mRNA_3057 0.72 -0.5
214,072 + 11425 mRNA_3057 0.75 -0.9
214,224 - 11425 mRNA_3057 0.82 +0.0
214,238 - 11425 mRNA_3057 0.82 +0.2
214,243 + 11425 mRNA_3057 0.83 -0.3
214,523 + -1.4
214,665 + -0.5
214,696 + -0.1
214,932 + -1.8
214,987 + -1.1
214,988 + +0.5
215,019 + +0.1
215,262 - 11426 mRNA_3058 0.19 -0.2
215,363 - 11426 mRNA_3058 0.25 -0.7
215,509 + 11426 mRNA_3058 0.34 +0.2
215,589 - 11426 mRNA_3058 0.39 -0.1
215,589 - 11426 mRNA_3058 0.39 +1.5
215,589 - 11426 mRNA_3058 0.39 -0.6
215,589 - 11426 mRNA_3058 0.39 +0.2
215,595 + 11426 mRNA_3058 0.40 +1.2
215,643 + 11426 mRNA_3058 0.43 -0.4
215,766 + 11426 mRNA_3058 0.50 +1.2
215,766 - 11426 mRNA_3058 0.50 -0.6
215,839 - 11426 mRNA_3058 0.55 -1.3
215,842 - 11426 mRNA_3058 0.55 +0.9
215,866 + 11426 mRNA_3058 0.56 +0.3
215,905 - 11426 mRNA_3058 0.59 +0.7
216,117 + 11426 mRNA_3058 0.72 -1.0
216,133 - 11426 mRNA_3058 0.73 +0.9
216,179 - 11426 mRNA_3058 0.76 -0.8
216,189 - 11426 mRNA_3058 0.77 +0.6
216,191 - 11426 mRNA_3058 0.77 -0.3
216,234 - 11426 mRNA_3058 0.79 +0.7
216,271 - 11426 mRNA_3058 0.82 +0.4
216,345 - 11426 mRNA_3058 0.86 +0.1
216,395 - 11426 mRNA_3058 0.89 +0.7
216,443 + -0.4
216,446 - +1.6
216,449 + +0.5
216,569 + +0.4
216,570 + +2.8
216,674 + +0.5
216,742 + +0.4
216,837 - +1.9
216,865 - -4.9
216,868 - +0.3
216,879 + -5.3
216,882 + +0.4
216,884 - -0.5
217,004 + -0.7
217,009 - -0.5
217,011 - -0.5
217,029 - -0.5
217,032 + +0.2
217,035 - +0.5
217,037 + -0.8
217,038 + +0.7
217,045 - +1.4
217,152 - -0.4
217,173 + -1.7
217,193 + +0.2
217,252 - +0.5
217,317 + -0.5
217,461 - -0.2
217,464 + -0.2
217,470 - -0.2
217,470 - +0.0
217,475 + +1.4

Or see this region's nucleotide sequence