Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3093

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11460 and 11461 are separated by 370 nucleotides11461 and 11462 are separated by 328 nucleotides mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300,048 to 303,992 11460 mRNA_3093: 11461 - Hypothetical Protein, at 304,363 to 305,282 11461 mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305,611 to 307,227 11462

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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303,449 - 11460 mRNA_3092 0.86 -0.5
303,458 + 11460 mRNA_3092 0.86 +1.8
303,460 + 11460 mRNA_3092 0.86 -0.4
303,477 + 11460 mRNA_3092 0.87 -1.1
303,576 + 11460 mRNA_3092 0.89 -0.6
303,606 - +1.0
303,607 + +0.0
303,610 - -0.5
303,614 - +0.9
303,643 + +0.0
303,744 - +0.4
303,748 - +1.5
303,749 + -1.8
303,760 - -0.5
303,760 + +1.8
303,766 + +1.7
303,891 - +1.7
303,898 - +0.0
304,033 + +0.1
304,038 - +0.4
304,038 + -0.4
304,041 - +0.8
304,045 - +0.8
304,046 + -0.8
304,052 + +1.3
304,054 - +1.0
304,166 - +0.1
304,222 + -0.1
304,371 + +0.5
304,445 + -0.0
304,482 + 11461 mRNA_3093 0.13 -1.2
304,494 + 11461 mRNA_3093 0.14 +0.8
304,599 + 11461 mRNA_3093 0.26 +0.2
304,609 - 11461 mRNA_3093 0.27 -1.9
304,687 - 11461 mRNA_3093 0.35 +0.1
304,695 + 11461 mRNA_3093 0.36 -0.6
304,753 + 11461 mRNA_3093 0.42 +1.0
304,926 - 11461 mRNA_3093 0.61 +0.9
304,959 + 11461 mRNA_3093 0.65 -0.2
304,999 + 11461 mRNA_3093 0.69 -0.3
305,056 - 11461 mRNA_3093 0.75 -0.4
305,060 - 11461 mRNA_3093 0.76 +0.5
305,077 - 11461 mRNA_3093 0.78 +0.4
305,208 + -0.6
305,211 - -1.5
305,219 + -1.5
305,223 + +0.6
305,339 - +0.5
305,364 + -1.0
305,365 + -1.2
305,367 + +1.3
305,369 + -0.1
305,376 - -0.2
305,377 + +0.8
305,378 - -0.2
305,381 - +1.5
305,381 - -0.3
305,470 + +1.3
305,481 - +1.8
305,483 + +2.0
305,492 + +0.4
305,492 + -0.2
305,508 + +0.4
305,508 - +0.8
305,512 - -2.0
305,513 - -0.9
305,516 - -0.4
305,516 + +0.7
305,520 - -1.2
305,522 + -0.6
305,524 - -0.9
305,535 - +0.2
305,542 + +1.1
305,562 - -0.4
305,628 + +0.9
305,636 - +0.4
305,660 - +0.4
305,664 - -1.3
305,680 + +1.4
305,683 - -0.8
305,687 + +0.7
305,694 - -0.6
305,725 - +0.6
305,797 - 11462 mRNA_3094 0.12 +0.3
305,803 - 11462 mRNA_3094 0.12 -0.7
305,816 + 11462 mRNA_3094 0.13 -0.7
305,834 - 11462 mRNA_3094 0.14 -0.0
305,847 + 11462 mRNA_3094 0.15 +1.6
305,848 + 11462 mRNA_3094 0.15 +0.3
305,876 - 11462 mRNA_3094 0.16 -0.9
305,931 - 11462 mRNA_3094 0.20 -1.2
305,979 + 11462 mRNA_3094 0.23 -0.2
305,989 + 11462 mRNA_3094 0.23 +0.0
306,002 - 11462 mRNA_3094 0.24 +0.7
306,112 + 11462 mRNA_3094 0.31 +0.3
306,128 + 11462 mRNA_3094 0.32 -1.2
306,252 - 11462 mRNA_3094 0.40 -1.3

Or see this region's nucleotide sequence