Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3103

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11470 and 11471 are separated by 586 nucleotides11471 and 11472 are separated by 565 nucleotides mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243 11470 mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328,830 to 331,254 11471 mRNA_3104: 11472 - HMMPfam-Uncharacterized conserved protein (DUF2156)-PF09924, at 331,820 to 333,279 11472

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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327,831 + 11470 mRNA_3102 0.83 -0.5
327,869 - 11470 mRNA_3102 0.85 +1.0
327,876 - 11470 mRNA_3102 0.85 -0.1
328,304 - +0.9
328,318 - -0.9
328,320 - +1.1
328,341 + +0.3
328,457 + +0.3
328,496 + -0.8
328,548 - +0.4
328,864 + -1.5
328,932 + +1.3
328,998 - +1.1
329,099 - 11471 mRNA_3103 0.11 +0.9
329,100 + 11471 mRNA_3103 0.11 +0.3
329,100 + 11471 mRNA_3103 0.11 -0.1
329,961 + 11471 mRNA_3103 0.47 -0.3
329,963 - 11471 mRNA_3103 0.47 +0.2
330,001 + 11471 mRNA_3103 0.48 -0.2
330,436 + 11471 mRNA_3103 0.66 -0.1
330,609 + 11471 mRNA_3103 0.73 -0.9
330,999 + 11471 mRNA_3103 0.89 -0.2
331,303 - +0.9
331,419 + -1.0
331,430 + +2.1
331,584 - -2.3
331,593 + -0.1
331,859 + -0.0
331,864 + -2.1
331,875 - -1.0
331,877 + -0.5
332,159 - 11472 mRNA_3104 0.23 -0.7
332,167 + 11472 mRNA_3104 0.24 -0.3

Or see this region's nucleotide sequence