Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3146

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11513 and 11514 are separated by 138 nucleotides11514 and 11515 are separated by 347 nucleotides mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422,365 to 423,654 11513 mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423,793 to 427,312 11514 mRNA_3147: 11515 - Hypothetical Protein, at 427,660 to 428,214 11515

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
422,923 - 11513 mRNA_3145 0.43 -0.3
423,146 + 11513 mRNA_3145 0.61 -0.1
423,160 - 11513 mRNA_3145 0.62 +0.7
423,386 + 11513 mRNA_3145 0.79 -0.3
423,418 - 11513 mRNA_3145 0.82 +0.9
423,449 - 11513 mRNA_3145 0.84 -1.2
423,553 - +0.4
423,553 + +0.2
423,587 - -0.7
423,640 - -0.1
423,685 + +0.4
423,708 + -0.4
423,963 - +0.1
424,268 - 11514 mRNA_3146 0.13 -0.0
424,452 + 11514 mRNA_3146 0.19 +1.9
424,455 - 11514 mRNA_3146 0.19 +1.3
424,517 + 11514 mRNA_3146 0.21 +1.4
424,562 - 11514 mRNA_3146 0.22 +0.4
424,713 + 11514 mRNA_3146 0.26 +0.1
424,714 + 11514 mRNA_3146 0.26 +0.0
424,805 + 11514 mRNA_3146 0.29 +0.3
424,844 + 11514 mRNA_3146 0.30 -1.4
424,847 - 11514 mRNA_3146 0.30 +0.2
425,001 - 11514 mRNA_3146 0.34 +0.2
425,158 - 11514 mRNA_3146 0.39 -0.3
425,188 - 11514 mRNA_3146 0.40 +0.7
425,191 - 11514 mRNA_3146 0.40 +2.9
425,196 - 11514 mRNA_3146 0.40 +0.0
425,203 + 11514 mRNA_3146 0.40 +1.2
425,203 + 11514 mRNA_3146 0.40 +0.1
425,203 + 11514 mRNA_3146 0.40 -0.2
425,282 - 11514 mRNA_3146 0.42 +0.7
425,286 - 11514 mRNA_3146 0.42 +1.2
425,573 + 11514 mRNA_3146 0.51 +0.1
425,575 - 11514 mRNA_3146 0.51 -0.3
425,898 - 11514 mRNA_3146 0.60 -0.2
426,037 + 11514 mRNA_3146 0.64 -1.2
426,058 - 11514 mRNA_3146 0.64 +0.2
426,323 - 11514 mRNA_3146 0.72 +0.4
426,639 - 11514 mRNA_3146 0.81 +0.6
426,921 - 11514 mRNA_3146 0.89 +0.5
426,952 + 11514 mRNA_3146 0.90 +0.1
427,071 + -0.9
427,081 - +3.2
427,083 + -0.8
427,205 - -1.1
427,205 - -0.1
427,210 - -0.0
427,214 + +1.2
427,226 + -0.2
427,228 - +0.4
427,237 + +1.5
427,238 + +0.5
427,390 - +1.1
427,392 - +1.8
427,399 + -1.1
427,404 + +1.7
427,406 - -0.6
427,412 - -1.2
427,413 + +0.5
427,422 - +1.1
427,424 + -1.4
427,520 - +1.7
427,525 - +0.4
427,537 + +1.4
427,669 + -0.4
427,682 + -0.1
427,713 - +0.7
427,793 + 11515 mRNA_3147 0.24 -0.9
427,812 - 11515 mRNA_3147 0.27 -1.0
428,009 - 11515 mRNA_3147 0.63 -0.2
428,074 - 11515 mRNA_3147 0.75 +0.3
428,288 + +0.1

Or see this region's nucleotide sequence