Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3158

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11525 and 11526 are separated by 338 nucleotides11526 and 11527 are separated by 67 nucleotides mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450,126 to 451,000 11525 mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451,339 to 452,325 11526 mRNA_3159: 11527 - K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1, at 452,393 to 454,134 11527

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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450,483 + 11525 mRNA_3157 0.41 +1.2
450,606 - 11525 mRNA_3157 0.55 +0.2
450,608 - 11525 mRNA_3157 0.55 +0.2
450,614 + 11525 mRNA_3157 0.56 -0.1
450,633 + 11525 mRNA_3157 0.58 -0.0
450,768 + 11525 mRNA_3157 0.73 +1.5
450,770 + 11525 mRNA_3157 0.74 -0.4
450,912 + 11525 mRNA_3157 0.90 -0.7
450,986 + +0.6
451,051 - +0.5
451,058 + -0.1
451,060 - +1.2
451,063 + -0.7
451,063 + +0.9
451,064 + -0.1
451,066 + +0.6
451,069 - +0.7
451,075 + -0.4
451,082 + +0.4
451,089 - -0.1
451,091 + -3.7
451,092 + +0.2
451,092 + -0.4
451,232 + +1.7
451,234 + +0.5
451,246 - +1.0
451,382 + -1.1
451,401 + +0.9
451,523 + 11526 mRNA_3158 0.19 +2.2
451,674 + 11526 mRNA_3158 0.34 -0.2
451,679 + 11526 mRNA_3158 0.34 +2.4
451,710 + 11526 mRNA_3158 0.38 +0.0
451,820 + 11526 mRNA_3158 0.49 -0.1
451,825 + 11526 mRNA_3158 0.49 +0.7
451,839 + 11526 mRNA_3158 0.51 -0.1
451,849 + 11526 mRNA_3158 0.52 +0.7
451,953 - 11526 mRNA_3158 0.62 -0.4
451,962 + 11526 mRNA_3158 0.63 -0.5
451,963 - 11526 mRNA_3158 0.63 +0.2
451,972 - 11526 mRNA_3158 0.64 +0.6
451,973 + 11526 mRNA_3158 0.64 -1.4
451,977 - 11526 mRNA_3158 0.65 +0.4
452,121 + 11526 mRNA_3158 0.79 -0.1
452,139 + 11526 mRNA_3158 0.81 -0.4
452,158 + 11526 mRNA_3158 0.83 -0.4
452,257 + +1.3
452,259 + -0.2
452,262 + +0.6
452,271 - +1.8
452,274 - -0.3
452,274 - +0.7
452,279 - +0.4
452,279 + -0.5
452,284 + -0.6
452,284 + +1.8
452,284 + -0.1
452,285 - +0.8
452,401 - -0.5
452,425 - -0.5
452,426 - +2.8
452,427 + -0.0
452,430 + -0.2
452,464 - +0.5
452,562 - -0.1
452,564 + -0.1
452,576 + 11527 mRNA_3159 0.11 -0.1
452,870 + 11527 mRNA_3159 0.27 +0.4
452,872 + 11527 mRNA_3159 0.27 +0.1
453,000 - 11527 mRNA_3159 0.35 +2.7
453,010 - 11527 mRNA_3159 0.35 -1.2
453,059 - 11527 mRNA_3159 0.38 -0.4
453,140 - 11527 mRNA_3159 0.43 -0.1
453,281 + 11527 mRNA_3159 0.51 -5.4

Or see this region's nucleotide sequence