Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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12 + -0.6
12 + +1.1
15 + +1.0
16 + -0.4
18 + +1.1
22 + +0.3
25 + -1.7
57 - +0.6
61 - +1.0
62 + -0.1
62 + -0.1
66 + +0.9
72 + -1.1
72 + +0.3
72 + +0.5
75 + +1.0
78 - +1.9
105 + +0.9
110 - -1.3
114 + +0.5
115 + -0.9
118 + -1.0
122 + +0.6
122 - -0.0
124 + +0.9
135 + +0.6
147 + -0.5
157 + +1.1
161 + +0.3
168 + +1.2
174 + -0.6
177 - -1.0
228 + +2.4
247 + +0.8
252 - +2.1
253 - -0.2
255 + -0.2
258 + +0.2
264 - -0.0
269 + +0.0
269 - +0.7
274 + +1.5
275 - -0.4
277 + -2.5
280 + +1.5
280 + -0.0
283 - +0.8
285 - -0.0
287 + +0.3
287 + -2.1
288 + +0.3
292 - +1.4
293 + -0.9
298 + +0.7
305 - +0.4
314 + -0.3
320 + -0.4
368 + +0.5
370 - +1.2
372 + -0.1
382 + +0.3
384 + +0.5
391 + +2.3
391 - +0.2
397 + -0.9
397 - +0.2
402 + -0.3
405 + -1.7
423 - +1.0
430 + +1.0
440 + +1.3
446 + +2.1
470 + -0.8
524 + -1.0
532 + -0.2
545 - +0.9
557 + +0.0
569 + +0.4
570 - -2.9
583 + -0.3
584 + +0.7
603 - -0.2
603 + -0.3
634 - 11537 mRNA_3169 0.11 +0.0
636 + 11537 mRNA_3169 0.11 -0.1
646 + 11537 mRNA_3169 0.12 +0.2
661 + 11537 mRNA_3169 0.13 +0.3
667 + 11537 mRNA_3169 0.14 -0.2
698 + 11537 mRNA_3169 0.17 +0.5
704 - 11537 mRNA_3169 0.18 +0.1
705 - 11537 mRNA_3169 0.18 -0.3
721 - 11537 mRNA_3169 0.19 +0.7
725 + 11537 mRNA_3169 0.20 +0.7
738 - 11537 mRNA_3169 0.21 +1.5
849 + 11537 mRNA_3169 0.32 +0.4
871 + 11537 mRNA_3169 0.34 -2.6
883 + 11537 mRNA_3169 0.35 -0.1
894 + 11537 mRNA_3169 0.37 +0.1
895 + 11537 mRNA_3169 0.37 +0.1
922 + 11537 mRNA_3169 0.39 +0.6
965 - 11537 mRNA_3169 0.44 +1.0
1,012 - 11537 mRNA_3169 0.48 +1.2
1,026 + 11537 mRNA_3169 0.50 +0.2
1,026 + 11537 mRNA_3169 0.50 -0.2
1,105 + 11537 mRNA_3169 0.58 -1.2
1,123 + 11537 mRNA_3169 0.60 -0.3
1,141 + 11537 mRNA_3169 0.61 +2.3
1,142 + 11537 mRNA_3169 0.61 +0.7
1,165 + 11537 mRNA_3169 0.64 +1.3
1,174 - 11537 mRNA_3169 0.65 +0.6
1,174 + 11537 mRNA_3169 0.65 -0.2
1,259 + 11537 mRNA_3169 0.73 -0.8
1,265 + 11537 mRNA_3169 0.74 +0.1
1,268 + 11537 mRNA_3169 0.74 +1.2
1,269 - 11537 mRNA_3169 0.74 -0.2
1,288 - 11537 mRNA_3169 0.76 -0.5
1,297 + 11537 mRNA_3169 0.77 +0.4
1,303 - 11537 mRNA_3169 0.78 -0.2
1,399 + 11537 mRNA_3169 0.87 +0.5
1,412 - 11537 mRNA_3169 0.88 -0.5
1,419 - 11537 mRNA_3169 0.89 +0.6
1,423 - 11537 mRNA_3169 0.90 -4.0
1,429 - +0.1
1,453 + -0.1
1,459 + +0.0
1,459 + -0.7
1,460 - +0.8
1,461 + -0.4
1,462 + +1.4
1,467 + +0.7
1,470 - -1.3
1,474 - +0.4
1,485 + +0.8
1,520 + -0.2
1,523 + +1.3
1,531 - -0.9
1,537 + +0.1
1,541 + +1.0
1,562 + +0.4
1,567 + -0.3
1,572 + +0.8
1,582 - -0.5
1,584 - +0.3
1,589 + -0.1
1,596 - +0.4
1,601 - -0.8
1,602 + -0.6
1,605 + -1.7
1,609 + -1.5
1,616 + -0.0
1,636 + -0.3
1,654 + -1.8
1,656 - +2.1
1,666 + +0.4
1,675 - -1.2
1,682 - -2.1
1,697 - -0.4
1,709 + +0.6
1,709 - +0.5
1,711 + +0.2
1,718 - -1.2
1,719 + -0.5
1,722 - +0.1
1,723 + -0.2
1,725 - -0.4
1,725 - +1.1
1,727 + -1.4
1,730 + +0.2
1,731 + -0.4
1,732 + +0.4
1,732 + +0.8
1,734 + +0.9
1,734 + -0.7
1,734 + +0.2
1,739 - -0.3
1,740 + -0.1
1,744 - -0.4
1,747 + -0.9
1,749 + -0.5
1,759 + -0.5
1,759 + +0.1
1,759 + +0.3
1,761 + +1.4
1,763 + +0.3
1,765 + -0.7
1,767 + +0.7
1,769 + +0.2
1,772 + +0.5
1,772 + -0.4
1,774 + -1.6
1,774 + +1.2
1,775 + -2.0
1,776 - +0.8
1,776 + -0.4
1,777 + -1.1
1,778 + +0.0
1,778 - -0.8
1,781 - +2.0
1,783 - -0.1
1,783 - +0.2
1,783 - +0.7
1,783 - -1.4
1,784 + -0.2
1,789 + -1.4
1,789 - -0.9
1,791 + -0.2
1,792 + -0.8
1,793 + -1.8
1,795 + -0.5
1,796 + -1.8
1,796 - -0.9
1,798 + -0.4
1,800 + -0.6
1,801 + -0.5
1,805 + -0.4
1,805 + -1.6
1,807 + -0.1
1,813 - -0.3
1,814 + -0.8
1,814 + -1.3
1,818 - -0.2
1,851 - -1.4
1,874 + -0.9
1,881 - +0.3
1,885 - -0.7
1,891 - -2.0
1,896 - -2.3
1,912 + -1.3
1,912 + -2.7
1,914 - -1.7
1,916 - -1.8
1,917 - -1.8
1,919 + -0.5
1,922 - -0.5
1,923 - -1.9
1,934 - -2.7
1,935 + -2.2
1,938 - -2.4
1,938 - -2.4
1,940 - -1.6
1,941 + -2.2
1,941 + -2.2
1,942 + -0.5
1,943 - -2.7
1,944 + -1.8
1,944 - -2.7
1,945 - -1.2
1,945 + -1.8
1,946 - -2.7
1,947 + -0.1
1,960 - -3.0
1,968 + -0.5
1,980 + -3.6
2,015 + -0.2
2,067 - -3.3
2,081 - -2.5
2,091 + -2.9
2,220 + -3.8
2,229 - -2.2
2,235 - -2.9
2,237 - -2.4
2,242 + -0.3
2,242 - -1.2
2,245 - -1.5
2,248 - -1.1
2,251 + -1.1
2,254 - -3.8
2,261 + -3.2
2,262 - -2.2
2,266 + +0.3
2,268 + -2.2
2,400 + 11538 mRNA_3170 0.21 -2.6
2,401 - 11538 mRNA_3170 0.21 -1.7
2,404 + 11538 mRNA_3170 0.22 -2.4
2,414 + 11538 mRNA_3170 0.23 -1.5
2,420 - 11538 mRNA_3170 0.23 -1.3
2,439 + 11538 mRNA_3170 0.25 -3.0
2,446 + 11538 mRNA_3170 0.26 -0.3
2,470 - 11538 mRNA_3170 0.28 -3.9
2,516 - 11538 mRNA_3170 0.32 -0.9

Or see this region's nucleotide sequence