Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3175

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11542 and 11543 are separated by 446 nucleotides11543 and 11544 are separated by 369 nucleotides mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10,754 to 11,960 11542 mRNA_3175: 11543 - K01191 E3.2.1.24 alpha-mannosidase, at 12,407 to 17,406 11543 mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17,776 to 21,807 11544

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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11,991 + +0.8
12,077 + -0.2
12,411 + -0.1
12,584 + +0.7
12,995 + 11543 mRNA_3175 0.12 +0.3
13,364 - 11543 mRNA_3175 0.19 +1.7
13,388 - 11543 mRNA_3175 0.20 +1.4
13,408 + 11543 mRNA_3175 0.20 -2.1
13,424 + 11543 mRNA_3175 0.20 +0.6
13,509 - 11543 mRNA_3175 0.22 +0.0
13,543 + 11543 mRNA_3175 0.23 +1.2
13,605 + 11543 mRNA_3175 0.24 -0.6
13,714 - 11543 mRNA_3175 0.26 +0.4
13,818 + 11543 mRNA_3175 0.28 +0.8
13,845 - 11543 mRNA_3175 0.29 -0.5
14,006 - 11543 mRNA_3175 0.32 -0.7
14,112 + 11543 mRNA_3175 0.34 +0.2
14,133 + 11543 mRNA_3175 0.35 +1.1
14,250 - 11543 mRNA_3175 0.37 +1.2
14,270 - 11543 mRNA_3175 0.37 -1.2
14,290 + 11543 mRNA_3175 0.38 +2.2
14,290 + 11543 mRNA_3175 0.38 -0.5
14,292 - 11543 mRNA_3175 0.38 -0.7
14,387 - 11543 mRNA_3175 0.40 +0.8
14,397 - 11543 mRNA_3175 0.40 -0.7
14,425 - 11543 mRNA_3175 0.40 +0.2
14,599 + 11543 mRNA_3175 0.44 +2.5
14,713 - 11543 mRNA_3175 0.46 -1.0
14,956 + 11543 mRNA_3175 0.51 +1.7
15,195 - 11543 mRNA_3175 0.56 -0.8
15,196 + 11543 mRNA_3175 0.56 +0.8
15,249 + 11543 mRNA_3175 0.57 +0.3
15,288 - 11543 mRNA_3175 0.58 -0.1
15,289 + 11543 mRNA_3175 0.58 +0.4
15,548 - 11543 mRNA_3175 0.63 +0.4
15,560 + 11543 mRNA_3175 0.63 +0.5
15,848 + 11543 mRNA_3175 0.69 +0.2
16,181 + 11543 mRNA_3175 0.75 +0.7
16,270 - 11543 mRNA_3175 0.77 -0.4
16,290 + 11543 mRNA_3175 0.78 +0.3
16,379 - 11543 mRNA_3175 0.79 +0.6
16,389 + 11543 mRNA_3175 0.80 -0.2
16,414 + 11543 mRNA_3175 0.80 +0.4
16,869 - 11543 mRNA_3175 0.89 -0.4
17,120 - +1.5
17,136 - -0.1
17,151 - +0.4
17,239 + -0.7
17,276 - +1.4
17,290 - +0.4
17,299 + +1.5
17,310 + +0.7
17,316 - -1.9
17,445 - -0.3
17,463 + -0.9
17,479 + +1.0
17,581 - +1.2
17,605 - +1.0
17,607 - -0.3
17,616 + +1.4
17,631 - -0.9
17,712 - -0.8
17,739 - -0.0
17,742 - +0.9
17,772 - +1.9

Or see this region's nucleotide sequence