Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3183

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11550 and 11551 are separated by 231 nucleotides11551 and 11552 are separated by 956 nucleotides mRNA_3182: 11550 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 33,172 to 34,723 11550 mRNA_3183: 11551 - HMMPfam-Cohesin loading factor-PF10345, at 34,955 to 37,755 11551 mRNA_3184: 11552 - K13220 WBP4, FBP21 WW domain-binding protein 4, at 38,712 to 39,951 11552

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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34,039 + 11550 mRNA_3182 0.56 -1.1
34,047 - 11550 mRNA_3182 0.56 +0.7
34,155 - 11550 mRNA_3182 0.63 -0.5
34,161 + 11550 mRNA_3182 0.64 -0.8
34,172 - 11550 mRNA_3182 0.64 +0.2
34,274 + 11550 mRNA_3182 0.71 -0.5
34,342 - 11550 mRNA_3182 0.75 +0.2
34,466 + 11550 mRNA_3182 0.83 +1.0
34,477 + 11550 mRNA_3182 0.84 -1.7
34,486 + 11550 mRNA_3182 0.85 +0.3
34,631 - +1.0
34,756 - +0.8
34,778 - +0.1
34,877 - +1.5
34,900 + +1.9
35,010 - -0.6
35,376 - 11551 mRNA_3183 0.15 -0.8
37,551 - +1.2
37,818 - +0.1
37,827 + +0.2
37,975 + -0.1
37,977 + +0.2
37,980 - -0.0
37,980 - -0.1
38,084 - +0.7
38,102 + -0.1
38,103 - -0.1
38,114 + -0.4
38,127 - +0.0
38,242 - +0.7
38,581 + +0.7

Or see this region's nucleotide sequence