Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3230

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11597 and 11598 are separated by 940 nucleotides11598 and 11599 are separated by 42 nucleotides mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152,510 to 154,539 11597 mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155,480 to 157,759 11598 mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157,802 to 159,637 11599

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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154,487 - -1.9
154,897 - -1.0
154,921 - -0.6
154,927 - -1.1
155,030 - +1.0
155,044 - +1.3
155,076 + +0.5
155,192 - -0.8
155,211 + -0.8
155,214 + +0.1
155,336 - +0.0
155,344 - -0.6
155,348 - -0.0
155,350 - -0.2
155,350 + -0.5
155,352 - +0.7
155,356 + +2.5
155,363 - +0.5
155,368 - +0.8
155,370 - +0.3
155,371 - +1.3
155,373 + -1.4
155,375 - -0.4
155,376 + +0.6
155,378 + -0.3
155,378 + -0.3
155,383 + +0.7
155,419 - +0.7
155,543 - -0.1
155,553 - +0.2
155,942 + 11598 mRNA_3230 0.20 -0.7
155,979 + 11598 mRNA_3230 0.22 +1.3
156,136 + 11598 mRNA_3230 0.29 -0.3
156,139 - 11598 mRNA_3230 0.29 -0.3
156,421 - 11598 mRNA_3230 0.41 -2.9
156,560 - 11598 mRNA_3230 0.47 -0.2
156,566 - 11598 mRNA_3230 0.48 +0.2
156,602 + 11598 mRNA_3230 0.49 +0.1
156,711 + 11598 mRNA_3230 0.54 +0.2
157,016 + 11598 mRNA_3230 0.67 +0.2
157,148 - 11598 mRNA_3230 0.73 +1.2
157,158 - 11598 mRNA_3230 0.74 -0.2
157,302 - 11598 mRNA_3230 0.80 -0.4
157,320 + 11598 mRNA_3230 0.81 -1.4
157,324 - 11598 mRNA_3230 0.81 -1.0
157,453 - 11598 mRNA_3230 0.87 +0.2
157,461 - 11598 mRNA_3230 0.87 +0.3
157,468 + 11598 mRNA_3230 0.87 -0.3
157,617 - -1.2
157,627 + -1.0
157,629 - +2.0
157,665 - +1.5
157,672 + -0.5
157,676 + +0.1
157,679 + +0.4
157,710 - +1.5
157,923 - +0.2
158,269 + 11599 mRNA_3231 0.25 +0.2
158,379 + 11599 mRNA_3231 0.31 -0.8
158,724 + 11599 mRNA_3231 0.50 +0.3

Or see this region's nucleotide sequence