Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3293

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11661 and 11662 are separated by 13 nucleotides mRNA_3293: 11661 - K01440 PNC1 nicotinamidase, at 318,203 to 319,692 11661 mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319,706 to 321,575 11662

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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317,285 - +0.8
317,319 + +0.4
317,331 + -0.5
317,418 - +1.7
317,488 + -0.7
317,492 - +0.5
317,788 + +0.4
317,890 + +0.8
317,931 - +0.9
317,946 - -1.1
317,954 - +0.1
318,113 + +0.9
318,128 + -0.7
318,137 - -0.2
318,148 + +0.3
318,234 - +0.8
318,248 - +1.8
318,249 + -1.0
318,255 + +0.8
318,257 - -0.2
318,257 + +1.2
318,271 - -0.2
318,272 + -1.7
318,277 + +0.1
318,417 - 11661 mRNA_3293 0.14 -1.0
318,425 + 11661 mRNA_3293 0.15 +0.2
318,431 + 11661 mRNA_3293 0.15 +0.8
318,435 + 11661 mRNA_3293 0.16 -0.1
318,451 + 11661 mRNA_3293 0.17 -0.3
318,454 + 11661 mRNA_3293 0.17 -0.2
318,574 - 11661 mRNA_3293 0.25 +0.1
318,577 - 11661 mRNA_3293 0.25 -2.7
318,690 - 11661 mRNA_3293 0.33 -0.2
318,773 + 11661 mRNA_3293 0.38 +1.4
318,774 + 11661 mRNA_3293 0.38 -0.6
319,142 - 11661 mRNA_3293 0.63 -3.4
319,157 + 11661 mRNA_3293 0.64 +0.4
319,309 + 11661 mRNA_3293 0.74 +0.0
319,322 - 11661 mRNA_3293 0.75 +0.4
319,333 + 11661 mRNA_3293 0.76 -1.0
319,334 + 11661 mRNA_3293 0.76 -0.6
319,853 + +0.8

Or see this region's nucleotide sequence