Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3305

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11672 and 11673 are separated by 807 nucleotides11673 and 11674 are separated by 13 nucleotides mRNA_3304: 11672 - KOG2753 Uncharacterized conserved protein, contains PCI domain, at 350,587 to 352,119 11672 mRNA_3305: 11673 - KOG3299 Uncharacterized conserved protein, at 352,927 to 353,808 11673 mRNA_3306: 11674 - KOG0845 Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116), at 353,822 to 355,437 11674

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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352,123 + -0.8
352,124 - +0.5
352,144 + -0.6
352,244 - -0.1
352,367 - -0.5
352,420 - +0.4
352,689 - +0.8
352,834 - +0.1
353,006 - -1.6
353,527 + 11673 mRNA_3305 0.68 +1.2
353,880 - -2.2

Or see this region's nucleotide sequence