Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3330

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11697 and 11698 are separated by 556 nucleotides11698 and 11699 are separated by 430 nucleotides mRNA_3329: 11697 - Hypothetical Protein, at 405,409 to 406,722 11697 mRNA_3330: 11698 - Hypothetical Protein, at 407,279 to 408,287 11698 mRNA_3331: 11699 - Hypothetical Protein, at 408,718 to 409,947 11699

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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406,532 + 11697 mRNA_3329 0.85 +1.0
407,009 + -0.2
407,121 + +1.9
407,407 - 11698 mRNA_3330 0.13 -1.2
407,465 - 11698 mRNA_3330 0.18 -0.5
407,984 - 11698 mRNA_3330 0.70 -0.6
408,014 + 11698 mRNA_3330 0.73 +0.8
408,037 + 11698 mRNA_3330 0.75 +0.0
408,274 + -1.0

Or see this region's nucleotide sequence