Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3338

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11706 and 11707 are separated by 333 nucleotides mRNA_3338: 11706 - KOG3525 Subtilisin-like proprotein convertase, at 419,190 to 423,102 11706 mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423,436 to 425,345 11707

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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418,201 - -1.8
418,329 - +0.5
418,479 - -0.2
418,663 + -1.4
418,781 + -1.5
419,070 - +0.4
419,351 + +0.2
419,646 + 11706 mRNA_3338 0.12 -0.2
419,724 + 11706 mRNA_3338 0.14 +0.6
419,890 + 11706 mRNA_3338 0.18 -0.2
419,982 + 11706 mRNA_3338 0.20 +0.1
420,023 - 11706 mRNA_3338 0.21 -0.2
420,114 + 11706 mRNA_3338 0.24 +1.1
420,230 - 11706 mRNA_3338 0.27 -0.6
421,391 + 11706 mRNA_3338 0.56 -0.4
421,541 - 11706 mRNA_3338 0.60 +0.3
421,703 - 11706 mRNA_3338 0.64 -0.4
421,704 - 11706 mRNA_3338 0.64 +0.5
422,037 - 11706 mRNA_3338 0.73 -0.9
422,067 - 11706 mRNA_3338 0.74 -0.3
422,288 - 11706 mRNA_3338 0.79 -0.0
422,406 + 11706 mRNA_3338 0.82 +0.8
422,424 - 11706 mRNA_3338 0.83 +0.2
422,600 + 11706 mRNA_3338 0.87 -1.9
422,794 - -0.1
422,882 - +0.0
422,914 + -0.8
422,972 - -0.4
422,984 - -0.4
423,151 + -0.3
423,178 - -1.1
423,186 + -0.5
423,189 - +0.3
423,415 - -0.6
423,445 - +1.1
423,571 - -0.5
423,591 + +0.8
423,719 + 11707 mRNA_3339 0.15 +1.7
423,744 + 11707 mRNA_3339 0.16 +0.1
424,043 - 11707 mRNA_3339 0.32 +2.7

Or see this region's nucleotide sequence