Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3346

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11713 and 11714 are separated by 271 nucleotides mRNA_3345: 11713 - Hypothetical Protein, at 436,771 to 439,819 11713 mRNA_3346: 11714 - K19844 BEM2 GTPase-activating protein BEM2, at 440,091 to 443,147 11714

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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439,202 + 11713 mRNA_3345 0.80 +0.4
439,206 + 11713 mRNA_3345 0.80 -0.3
439,210 - 11713 mRNA_3345 0.80 +0.2
439,669 + -0.4
440,206 - +0.2
440,257 - +0.5
440,368 - +0.1
440,395 - +0.8
440,653 - 11714 mRNA_3346 0.18 +0.2
440,681 - 11714 mRNA_3346 0.19 +1.7
441,217 - 11714 mRNA_3346 0.37 -0.7
441,705 + 11714 mRNA_3346 0.53 +1.3
441,839 - 11714 mRNA_3346 0.57 -0.9
441,980 - 11714 mRNA_3346 0.62 +1.0
442,443 + 11714 mRNA_3346 0.77 +0.4
442,702 - 11714 mRNA_3346 0.85 +0.3
442,732 - 11714 mRNA_3346 0.86 +0.8
442,771 + 11714 mRNA_3346 0.88 +0.7
442,888 - -1.7
443,054 + +0.8
443,193 - +1.3
443,199 - +0.3
443,205 - -0.5
443,333 - +0.1

Or see this region's nucleotide sequence