Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3389

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11756 and 11757 are separated by 782 nucleotides11757 and 11758 are separated by 226 nucleotides mRNA_3388: 11756 - KOG1577 Aldo/keto reductase family proteins, at 559,521 to 561,050 11756 mRNA_3389: 11757 - K00521 E1.16.1.7 ferric-chelate reductase, at 561,833 to 564,101 11757 mRNA_3390: 11758 - K06617 E2.4.1.82 raffinose synthase, at 564,328 to 568,075 11758

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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561,111 - +1.0
561,114 + -0.1
561,120 + +0.8
561,123 - +0.4
561,130 + +1.1
561,182 + -0.2
561,263 + -0.5
561,267 + +0.2
561,287 + +0.2
561,308 + +0.6
561,315 - -0.5
561,331 + -0.2
561,393 + +0.0
561,400 - +0.8
561,403 + -0.7
561,404 - +0.4
561,411 + +0.2
561,414 - +0.8
561,416 - -0.5
561,418 - +1.3
561,425 - +0.8
561,439 + -0.2
561,448 - +0.1
561,450 + +0.5
561,455 + +0.6
561,460 - +0.5
561,503 - -0.0
561,557 + +0.1
561,587 - -1.1
561,592 - -0.7
561,599 + +1.1
561,603 + -0.6
561,666 - -0.1
561,666 - -1.0
561,680 - +0.5
561,689 + -1.2
561,692 - +1.1
561,705 + +1.4
561,708 - -0.5
561,709 + -0.2
561,709 + -0.3
561,719 + -0.1
561,722 - -0.4
561,726 + -0.4
561,729 - -0.2
561,730 - -0.9
561,731 - +1.7
561,749 - -0.1
561,751 + +1.5
561,754 + -1.0
561,756 + -0.3
561,759 - -1.3
561,895 - -1.1
561,896 + -1.2
561,906 + +0.7
562,013 - -0.8
562,033 - +0.6
562,282 - 11757 mRNA_3389 0.20 +0.0
562,287 - 11757 mRNA_3389 0.20 -0.3
562,738 + 11757 mRNA_3389 0.40 -0.3
563,218 + 11757 mRNA_3389 0.61 +0.7
563,338 - 11757 mRNA_3389 0.66 +0.5
563,338 - 11757 mRNA_3389 0.66 +0.1
564,121 - -0.7
564,220 + +0.4
564,255 - -0.7
564,469 - +0.5
564,568 + -0.2
564,648 - +1.3
564,878 + 11758 mRNA_3390 0.15 +0.4
564,934 + 11758 mRNA_3390 0.16 -0.9
564,961 - 11758 mRNA_3390 0.17 +0.8

Or see this region's nucleotide sequence