Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3407

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11774 and 11775 are separated by 224 nucleotides11775 and 11776 are separated by 705 nucleotides mRNA_3406: 11774 - Hypothetical Protein, at 12,464 to 13,384 11774 mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13,609 to 17,494 11775 mRNA_3408: 11776 - K00012 UGDH, ugd UDPglucose 6-dehydrogenase, at 18,200 to 20,454 11776

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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12,648 + 11774 mRNA_3406 0.20 +1.9
12,661 + 11774 mRNA_3406 0.21 -1.2
12,772 - 11774 mRNA_3406 0.33 +1.1
12,778 + 11774 mRNA_3406 0.34 +0.6
12,779 - 11774 mRNA_3406 0.34 +0.3
12,799 + 11774 mRNA_3406 0.36 +0.2
12,803 - 11774 mRNA_3406 0.37 -0.2
12,805 - 11774 mRNA_3406 0.37 +0.6
12,817 - 11774 mRNA_3406 0.38 +0.5
12,821 + 11774 mRNA_3406 0.39 +0.8
12,821 - 11774 mRNA_3406 0.39 +0.7
12,827 + 11774 mRNA_3406 0.39 +0.2
12,936 - 11774 mRNA_3406 0.51 -0.0
12,936 - 11774 mRNA_3406 0.51 +0.1
12,949 + 11774 mRNA_3406 0.53 -0.7
12,957 + 11774 mRNA_3406 0.54 -2.2
12,964 - 11774 mRNA_3406 0.54 +0.7
12,964 + 11774 mRNA_3406 0.54 +0.4
12,971 - 11774 mRNA_3406 0.55 +1.4
12,973 - 11774 mRNA_3406 0.55 -0.4
12,976 - 11774 mRNA_3406 0.56 -0.3
13,100 - 11774 mRNA_3406 0.69 -1.3
13,114 - 11774 mRNA_3406 0.71 -0.5
13,119 - 11774 mRNA_3406 0.71 -1.7
13,122 - 11774 mRNA_3406 0.71 +0.5
13,130 + 11774 mRNA_3406 0.72 +0.2
13,136 - 11774 mRNA_3406 0.73 -0.7
13,225 - 11774 mRNA_3406 0.83 -3.6
13,242 - 11774 mRNA_3406 0.84 +1.6
13,273 + 11774 mRNA_3406 0.88 -0.0
13,286 - 11774 mRNA_3406 0.89 -0.9
13,300 + -1.2
13,318 - -0.8
13,343 + -2.0
13,348 - -2.4
13,348 - -0.1
13,381 - -1.0
13,386 + -0.3
13,389 - -1.3
13,399 - -1.0
13,401 - +0.8
13,415 - +0.4
13,415 + -0.6
13,418 + +1.1
13,427 + -0.0
13,445 - +0.1
13,455 - -0.5
13,466 - -0.1
13,536 - -0.2
13,583 - -0.3
13,750 + -0.7
14,003 - 11775 mRNA_3407 0.10 -1.7
14,040 - 11775 mRNA_3407 0.11 +0.0
14,396 - 11775 mRNA_3407 0.20 +0.3
14,398 - 11775 mRNA_3407 0.20 -0.5
14,431 + 11775 mRNA_3407 0.21 -0.1
14,454 - 11775 mRNA_3407 0.22 -1.4
14,642 - 11775 mRNA_3407 0.27 -0.1
14,877 - 11775 mRNA_3407 0.33 -0.1
15,021 - 11775 mRNA_3407 0.36 +1.8
15,311 - 11775 mRNA_3407 0.44 +0.6
15,728 - 11775 mRNA_3407 0.55 -0.9
15,743 + 11775 mRNA_3407 0.55 -2.2
15,913 - 11775 mRNA_3407 0.59 +0.1
15,923 - 11775 mRNA_3407 0.60 +0.0
16,447 - 11775 mRNA_3407 0.73 -3.4
17,077 + 11775 mRNA_3407 0.89 -2.6
17,661 - +0.6
17,687 + +0.5
17,824 + +0.7
17,911 - +0.2
17,919 - +0.6
17,920 - -0.1
17,937 + -0.2
17,938 - -2.1
17,964 - -0.2
17,987 - +0.5
18,054 - +1.2
18,069 + -0.5
18,097 - +0.7
18,099 + +1.3
18,109 - +0.5
18,119 - +0.4
18,121 - +1.6
18,123 - +0.9
18,126 + -0.0
18,127 - +1.9
18,128 + -0.7
18,131 - -0.0
18,267 - +5.4
18,271 - +2.9
18,398 + +3.5

Or see this region's nucleotide sequence