Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3410

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11777 and 11778 are separated by 540 nucleotides mRNA_3409: 11777 - K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1, at 20,794 to 26,649 11777 mRNA_3410: 11778 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 27,190 to 28,187 11778

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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26,269 + -0.9
26,289 + +1.0
26,293 + +0.5
26,306 + -0.1
26,435 - -0.4
26,460 + -0.7
26,543 + +3.1
26,559 - +0.3
26,572 + -0.4
26,589 - +1.3
26,590 + +0.2
26,596 + +0.9
26,602 + -2.0
26,621 - -0.6
26,640 - +0.8
26,645 + +0.1
26,647 - -0.0
26,654 + -0.5
26,654 - -0.1
26,666 - +1.2
26,915 + -0.2
26,941 - -0.4
26,942 - -0.2
26,947 + -0.3
26,957 + +0.4
27,048 + -0.6
27,130 + -0.3
27,371 + 11778 mRNA_3410 0.18 -0.6
27,378 + 11778 mRNA_3410 0.19 -0.0
27,394 - 11778 mRNA_3410 0.20 +1.3
27,403 + 11778 mRNA_3410 0.21 +0.7
27,518 - 11778 mRNA_3410 0.33 +0.1
27,574 - 11778 mRNA_3410 0.38 -0.3
28,109 + -0.3
28,416 + -0.2
28,491 - +0.4
28,493 + +0.5
28,718 + -1.1
28,730 + +0.4
28,738 + +0.8
28,753 - -0.6
28,771 + +0.4
28,771 + -1.9
28,786 - -1.1
28,787 + +0.1
28,789 + -1.4
28,798 + -0.6
28,813 - +0.2
28,832 + -0.1

Or see this region's nucleotide sequence