Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3436

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11803 and 11804 are separated by 389 nucleotides11804 and 11805 are separated by 147 nucleotides mRNA_3435: 11803 - K12614 DDX6, RCK, DHH1 ATP-dependent RNA helicase DDX6/DHH1, at 91,986 to 94,017 11803 mRNA_3436: 11804 - HMMPfam-Oligosaccharyltransferase subunit Ribophorin II-PF05817, at 94,407 to 97,285 11804 mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97,433 to 99,630 11805

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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93,718 - 11803 mRNA_3435 0.85 -0.2
93,863 + +0.3
94,022 + +0.3
94,207 - +0.2
94,477 - +0.3
94,553 + +1.6
94,683 + +0.2
95,332 + 11804 mRNA_3436 0.32 -1.4
95,465 - 11804 mRNA_3436 0.37 -0.1
95,465 - 11804 mRNA_3436 0.37 +1.4
95,618 + 11804 mRNA_3436 0.42 -0.2
95,727 + 11804 mRNA_3436 0.46 -1.7
95,904 - 11804 mRNA_3436 0.52 -0.2
95,911 + 11804 mRNA_3436 0.52 -0.5
95,911 + 11804 mRNA_3436 0.52 -0.2
95,968 - 11804 mRNA_3436 0.54 +0.5
96,024 + 11804 mRNA_3436 0.56 -0.8
96,163 - 11804 mRNA_3436 0.61 -0.2
96,172 + 11804 mRNA_3436 0.61 -0.0
96,495 - 11804 mRNA_3436 0.73 -0.4
96,623 - 11804 mRNA_3436 0.77 -1.5
96,894 - 11804 mRNA_3436 0.86 -0.1
96,915 - 11804 mRNA_3436 0.87 +1.2
96,930 + 11804 mRNA_3436 0.88 -0.8
97,002 - +0.9
97,080 - +0.7
97,204 + +0.5
97,358 + +0.3
97,388 + -0.3
97,412 - +0.5

Or see this region's nucleotide sequence