Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3439

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11806 and 11807 are separated by 698 nucleotides mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99,777 to 103,344 11806 mRNA_3439: 11807 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 104,043 to 108,423 11807

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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103,102 + +0.2
103,379 + +0.1
103,397 + -1.0
103,670 - -0.9
103,695 + +0.9
103,777 + -0.2
103,806 - +1.5
103,969 - -0.7
104,231 + -0.1
104,408 + -2.4
104,525 - 11807 mRNA_3439 0.11 -1.0
106,338 + 11807 mRNA_3439 0.52 +2.3
107,531 + 11807 mRNA_3439 0.80 -1.2
107,829 - 11807 mRNA_3439 0.86 -0.7
107,914 - 11807 mRNA_3439 0.88 +1.1
108,115 + -0.3
109,237 - +1.9
109,244 - -1.8
109,394 + +0.7

Or see this region's nucleotide sequence