Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3445

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11812 and 11813 are separated by 843 nucleotides11813 and 11814 are separated by 653 nucleotides mRNA_3444: 11812 - Hypothetical Protein, at 118,476 to 119,519 11812 mRNA_3445: 11813 - HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041, at 120,363 to 121,884 11813 mRNA_3446: 11814 - K07393 ECM4 putative glutathione S-transferase, at 122,538 to 123,846 11814

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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119,578 - -2.5
119,579 + -1.4
119,601 + -0.2
119,736 + -1.2
119,904 - -0.4
120,034 - +0.3
120,892 + 11813 mRNA_3445 0.35 -0.6
120,934 - 11813 mRNA_3445 0.38 -0.4
121,217 - 11813 mRNA_3445 0.56 -0.3
121,632 + 11813 mRNA_3445 0.83 -0.4
121,634 - 11813 mRNA_3445 0.84 +2.9
121,636 - 11813 mRNA_3445 0.84 -1.6
122,049 - +1.7
122,071 - +0.1
122,231 - +0.9
122,238 + -0.2
122,238 - +0.7
122,238 - +1.4
122,239 + -0.1
122,240 + +0.6
122,245 + -0.9
122,381 - +0.0
122,514 + +0.2
122,526 + -3.2
122,669 - 11814 mRNA_3446 0.10 +1.3
122,861 - 11814 mRNA_3446 0.25 +0.6

Or see this region's nucleotide sequence