Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3462

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11829 and 11830 are separated by 517 nucleotides11830 and 11831 are separated by 749 nucleotides mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154,218 to 156,143 11829 mRNA_3462: 11830 - K17978 NUM1 nuclear migration protein NUM1, at 156,661 to 162,747 11830 mRNA_3463: 11831 - Hypothetical Protein, at 163,497 to 164,279 11831

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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155,765 + 11829 mRNA_3461 0.80 +0.1
155,847 - 11829 mRNA_3461 0.85 +0.6
156,002 + +0.2
156,017 + -1.1
156,019 - +0.9
156,054 + +1.1
156,226 - -0.7
156,308 + +0.1
156,316 - -0.6
156,317 + +0.7
156,320 + -0.8
156,476 + +1.4
159,455 + 11830 mRNA_3462 0.46 -0.3
160,790 + 11830 mRNA_3462 0.68 -0.6
162,273 - -1.6
162,281 + -0.5
162,963 + -0.6
163,104 - +1.8
163,108 - -0.1
163,122 - -2.8
163,243 - -0.6
163,265 - +0.8
163,270 - -0.3
163,270 - +0.6
163,272 + +0.9
163,274 - -0.9
163,274 + -1.6
163,275 + +0.8
163,419 - +0.6
163,422 + -0.6
163,437 + -0.3
163,440 + -1.0
163,560 + -1.8
163,566 + +0.4
163,606 - 11831 mRNA_3463 0.14 -0.4
163,714 - 11831 mRNA_3463 0.28 -1.0
163,725 - 11831 mRNA_3463 0.29 -0.8

Or see this region's nucleotide sequence