Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3491

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11858 and 11859 are separated by 594 nucleotides11859 and 11860 are separated by 212 nucleotides mRNA_3490: 11858 - K05236 COPA, RET1 coatomer subunit alpha, at 227,582 to 231,954 11858 mRNA_3491: 11859 - K03007 RPB10, POLR2L DNA-directed RNA polymerases I, II, and III subunit RPABC5, at 232,549 to 233,056 11859 mRNA_3492: 11860 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,SUPERFAMILY--SSF53927, at 233,269 to 234,150 11860

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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232,171 - +0.4
232,192 + +0.5
233,023 + -0.4
233,223 - +0.5
233,550 - 11860 mRNA_3492 0.32 -0.6
233,638 - 11860 mRNA_3492 0.42 +2.1
233,913 - 11860 mRNA_3492 0.73 +1.3

Or see this region's nucleotide sequence