Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3508

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11875 and 11876 are separated by 198 nucleotides11876 and 11877 are separated by 181 nucleotides mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260,634 to 261,961 11875 mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262,160 to 263,731 11876 mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263,913 to 265,913 11877

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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261,223 + 11875 mRNA_3507 0.44 +0.6
261,476 + 11875 mRNA_3507 0.63 -1.0
261,525 - 11875 mRNA_3507 0.67 +1.1
261,664 + 11875 mRNA_3507 0.78 -0.0
262,069 - +0.9
262,210 - -0.2
262,247 + +0.8
262,366 - 11876 mRNA_3508 0.13 +0.2
262,526 - 11876 mRNA_3508 0.23 -0.0
262,529 + 11876 mRNA_3508 0.23 +1.7
262,544 + 11876 mRNA_3508 0.24 -1.0
262,676 + 11876 mRNA_3508 0.33 +0.1
263,057 - 11876 mRNA_3508 0.57 +2.0
263,204 - 11876 mRNA_3508 0.66 +0.5
263,539 + 11876 mRNA_3508 0.88 +0.0
263,561 + 11876 mRNA_3508 0.89 -0.6
263,674 + -1.5
263,703 + -0.7
263,885 - +0.6
263,944 - +0.0
263,975 - -1.1
264,072 - -0.5
264,328 + 11877 mRNA_3509 0.21 +0.3
264,688 + 11877 mRNA_3509 0.39 +0.8

Or see this region's nucleotide sequence