Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3521

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11889 and 11890 are separated by 709 nucleotides mRNA_3521: 11889 - K02900 RP-L27Ae, RPL27A large subunit ribosomal protein L27Ae, at 302,044 to 303,082 11889 mRNA_3522: 11890 - K03008 RPB11, POLR2J DNA-directed RNA polymerase II subunit RPB11, at 303,792 to 304,536 11890

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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301,047 + -0.7
301,049 - +0.2
301,058 + -0.2
301,385 + +0.6
301,499 - -0.1
301,882 + +2.0
303,150 + +3.0
303,216 - -0.3

Or see this region's nucleotide sequence