Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3525

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11892 and 11893 are separated by 294 nucleotides11893 and 11894 are separated by 723 nucleotides mRNA_3524: 11892 - Hypothetical Protein, at 306,520 to 307,367 11892 mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307,662 to 311,002 11893 mRNA_3526: 11894 - K06666 TUP1 glucose repression regulatory protein TUP1, at 311,726 to 314,497 11894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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306,829 + 11892 mRNA_3524 0.36 -0.1
306,840 + 11892 mRNA_3524 0.38 +0.4
306,998 - 11892 mRNA_3524 0.56 +1.0
307,043 + 11892 mRNA_3524 0.62 +0.2
307,053 + 11892 mRNA_3524 0.63 -0.2
307,084 + 11892 mRNA_3524 0.67 +0.2
307,125 - 11892 mRNA_3524 0.71 -0.5
307,152 + 11892 mRNA_3524 0.75 -0.2
307,164 - 11892 mRNA_3524 0.76 -0.3
307,226 + 11892 mRNA_3524 0.83 +0.2
307,233 - 11892 mRNA_3524 0.84 +0.2
307,233 - 11892 mRNA_3524 0.84 +1.8
307,243 + 11892 mRNA_3524 0.85 +0.4
307,248 + 11892 mRNA_3524 0.86 -0.8
307,257 - 11892 mRNA_3524 0.87 -0.3
307,289 + -1.3
307,351 - -1.6
307,356 + +2.4
307,367 + -1.3
307,405 + +0.3
307,407 - +0.7
307,416 - -0.4
307,456 + +0.4
307,515 - -1.0
307,769 - -1.9
307,816 - +0.7
307,904 - +0.7
307,904 - -1.0
307,905 - -0.4
307,907 - +0.9
307,908 + +0.2
307,910 + -0.1
307,919 - +1.5
307,919 - +1.0
307,937 + +0.9
308,331 - 11893 mRNA_3525 0.20 -0.7
308,369 + 11893 mRNA_3525 0.21 +0.0
308,408 + 11893 mRNA_3525 0.22 +0.5
308,450 - 11893 mRNA_3525 0.24 -0.3
308,485 + 11893 mRNA_3525 0.25 +0.7
308,501 + 11893 mRNA_3525 0.25 +0.7
308,510 + 11893 mRNA_3525 0.25 -0.4
308,511 + 11893 mRNA_3525 0.25 +1.2
308,620 + 11893 mRNA_3525 0.29 -0.8
308,679 + 11893 mRNA_3525 0.30 +2.0
308,772 + 11893 mRNA_3525 0.33 +0.8
309,252 + 11893 mRNA_3525 0.48 +0.7
309,258 - 11893 mRNA_3525 0.48 -0.2
309,400 + 11893 mRNA_3525 0.52 +1.5
309,676 - 11893 mRNA_3525 0.60 +0.3
309,745 + 11893 mRNA_3525 0.62 -1.6
310,426 - 11893 mRNA_3525 0.83 -0.3
310,441 + 11893 mRNA_3525 0.83 -0.3
310,702 - +2.2
310,718 + +1.3
310,847 - -0.9
310,862 + -0.3
310,863 + +0.3
310,865 + +1.0
310,884 + -1.4
310,884 - +1.6
310,888 - +0.2
310,889 + +0.5
310,892 - -0.7
310,927 + -0.7
311,062 - -0.1
311,203 + -0.0

Or see this region's nucleotide sequence