Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3531

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11899 and 11900 are separated by 116 nucleotides mRNA_3531: 11899 - K00604 MTFMT, fmt methionyl-tRNA formyltransferase, at 324,086 to 325,765 11899 mRNA_3532: 11900 - K00670 NAA30, MAK3 N-alpha-acetyltransferase 30, at 325,882 to 326,936 11900

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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323,095 + -0.7
323,649 - -0.6
323,654 - +2.1
323,654 + -0.4
323,676 + -0.1
323,679 - -0.5
323,680 + -0.3
323,798 - -2.2
323,803 - -0.0
323,805 + -0.5
323,814 + +0.3
323,816 + +1.6
323,931 + +0.3
325,803 + -1.6
325,811 - -0.5
325,879 + +1.1
326,136 - 11900 mRNA_3532 0.24 +2.3
326,152 - 11900 mRNA_3532 0.26 +0.0
326,158 + 11900 mRNA_3532 0.26 +1.1
326,167 - 11900 mRNA_3532 0.27 +0.2
326,179 + 11900 mRNA_3532 0.28 +1.7
326,192 - 11900 mRNA_3532 0.29 +1.2
326,202 - 11900 mRNA_3532 0.30 +1.0
326,249 - 11900 mRNA_3532 0.35 +1.1
326,266 - 11900 mRNA_3532 0.36 +0.2
326,266 + 11900 mRNA_3532 0.36 +2.0
326,274 - 11900 mRNA_3532 0.37 -0.3
326,290 + 11900 mRNA_3532 0.39 +1.1
326,312 - 11900 mRNA_3532 0.41 +1.4
326,326 + 11900 mRNA_3532 0.42 +1.0
326,326 + 11900 mRNA_3532 0.42 +1.0
326,326 - 11900 mRNA_3532 0.42 +0.9
326,343 - 11900 mRNA_3532 0.44 +0.8
326,347 + 11900 mRNA_3532 0.44 +0.8
326,364 - 11900 mRNA_3532 0.46 +1.2
326,365 - 11900 mRNA_3532 0.46 +0.7
326,390 - 11900 mRNA_3532 0.48 +0.0
326,391 + 11900 mRNA_3532 0.48 +2.9
326,419 - 11900 mRNA_3532 0.51 -1.6
326,426 - 11900 mRNA_3532 0.52 -0.4
326,531 - 11900 mRNA_3532 0.62 -0.5
326,545 + 11900 mRNA_3532 0.63 +0.2
326,554 + 11900 mRNA_3532 0.64 +1.7
326,640 + 11900 mRNA_3532 0.72 +1.9
326,682 - 11900 mRNA_3532 0.76 +0.8

Or see this region's nucleotide sequence