Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3541

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11908 and 11909 are separated by 185 nucleotides11909 and 11910 are separated by 256 nucleotides mRNA_3540: 11908 - K00784 rnz ribonuclease Z, at 6,477 to 8,169 11908 mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8,355 to 10,759 11909 mRNA_3542: 11910 - K01597 MVD, mvaD diphosphomevalonate decarboxylase, at 11,016 to 12,700 11910

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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7,439 + 11908 mRNA_3540 0.57 -0.9
7,439 + 11908 mRNA_3540 0.57 -2.0
7,441 - 11908 mRNA_3540 0.57 +0.4
7,682 - 11908 mRNA_3540 0.71 +0.1
7,740 - 11908 mRNA_3540 0.75 -0.9
7,778 + 11908 mRNA_3540 0.77 -2.0
7,983 + 11908 mRNA_3540 0.89 +0.7
8,056 + +0.1
8,120 + +0.2
8,123 - -1.5
8,179 - -1.2
8,311 - -1.4
8,312 + -1.7
8,313 - +1.6
8,336 + +0.3
8,340 + -0.8
9,182 - 11909 mRNA_3541 0.34 -0.6
10,758 - -1.0
10,831 + -1.0

Or see this region's nucleotide sequence