Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3547

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11914 and 11915 are separated by 477 nucleotides11915 and 11916 are separated by 244 nucleotides mRNA_3546: 11914 - HMMPfam-Domain of unknown function (DUF3844)-PF12955, at 18,733 to 20,553 11914 mRNA_3547: 11915 - K02973 RP-S23e, RPS23 small subunit ribosomal protein S23e, at 21,031 to 22,475 11915 mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22,720 to 24,408 11916

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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20,073 + 11914 mRNA_3546 0.74 -0.0
20,114 - 11914 mRNA_3546 0.76 +0.2
20,151 + 11914 mRNA_3546 0.78 +0.5
20,423 + +1.5
20,595 + -0.0
22,511 + -0.4
22,529 + +0.1
22,652 + +0.3
22,662 - +1.4
22,665 - +0.5
22,670 - -0.3
22,680 - +0.8
22,912 - 11916 mRNA_3548 0.11 +0.3
23,075 + 11916 mRNA_3548 0.21 -0.6
23,147 - 11916 mRNA_3548 0.25 +0.3
23,159 - 11916 mRNA_3548 0.26 -1.8
23,393 - 11916 mRNA_3548 0.40 +1.3

Or see this region's nucleotide sequence