Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3549

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11916 and 11917 are separated by 523 nucleotides11917 and 11918 are separated by 446 nucleotides mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22,720 to 24,408 11916 mRNA_3549: 11917 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 24,932 to 26,343 11917 mRNA_3550: 11918 - Hypothetical Protein, at 26,790 to 27,797 11918

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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24,097 - 11916 mRNA_3548 0.82 -0.5
24,671 + -0.2
24,714 - -0.2
25,093 + 11917 mRNA_3549 0.11 +0.1
25,567 - 11917 mRNA_3549 0.45 +0.4
25,884 - 11917 mRNA_3549 0.67 +0.1
25,976 - 11917 mRNA_3549 0.74 +1.3
26,114 - 11917 mRNA_3549 0.84 +2.1
26,160 - 11917 mRNA_3549 0.87 +0.6
26,308 - +0.1
26,468 + +1.3
26,603 - +0.5
26,610 - -0.6
26,709 + -0.3
26,733 - +0.7
26,751 - +0.7
26,877 + +0.5
26,885 - +0.7
26,891 - 11918 mRNA_3550 0.10 +0.3
26,896 + 11918 mRNA_3550 0.11 +0.0
26,902 - 11918 mRNA_3550 0.11 +0.8
26,903 + 11918 mRNA_3550 0.11 +1.4
26,903 + 11918 mRNA_3550 0.11 +0.5
27,034 + 11918 mRNA_3550 0.24 -0.2
27,042 + 11918 mRNA_3550 0.25 +0.3
27,332 + 11918 mRNA_3550 0.54 +0.9

Or see this region's nucleotide sequence