Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3580

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11948 and 11949 are separated by 79 nucleotides mRNA_3580: 11948 - KOG0715 Molecular chaperone (DnaJ superfamily), at 97,177 to 97,844 11948 mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97,924 to 100,153 11949

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
96,657 + +0.5
96,941 - +0.7
97,069 - -0.7
97,201 - -0.9
97,372 + 11948 mRNA_3580 0.29 -0.0
97,627 - 11948 mRNA_3580 0.67 -2.3
97,802 - +1.3
97,809 + -1.8
97,821 - +0.2
97,822 + +0.9
97,854 - +0.0
97,854 + -1.1
97,855 - +0.5
97,858 + -0.1
97,858 - -1.2
97,860 - +0.4
97,863 + +1.2
97,877 + +0.4
97,877 + -0.6
97,881 + -4.8
97,989 - +1.6
98,009 - +1.0
98,065 + -0.3
98,068 - -0.3
98,306 - 11949 mRNA_3581 0.17 -0.1
98,334 - 11949 mRNA_3581 0.18 -3.1
98,338 - 11949 mRNA_3581 0.19 -0.4
98,343 - 11949 mRNA_3581 0.19 -1.0
98,344 - 11949 mRNA_3581 0.19 +0.3
98,344 + 11949 mRNA_3581 0.19 -0.4
98,355 + 11949 mRNA_3581 0.19 +0.2
98,358 + 11949 mRNA_3581 0.19 -1.1
98,378 + 11949 mRNA_3581 0.20 +1.9
98,501 - 11949 mRNA_3581 0.26 -1.8
98,514 + 11949 mRNA_3581 0.26 +0.6
98,604 + 11949 mRNA_3581 0.30 -0.2
98,793 - 11949 mRNA_3581 0.39 +0.4

Or see this region's nucleotide sequence