Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3622

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11989 and 11990 are separated by 534 nucleotides mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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185,231 - 11989 mRNA_3621 0.89 -0.5
185,249 + 11989 mRNA_3621 0.90 -2.0
185,400 + -1.8
185,410 + -0.6
185,523 - -0.5
185,533 - -1.5
185,533 - -0.3
185,548 - -1.5
185,548 - -0.2
185,549 - -0.8
185,553 + -1.1
185,560 + +1.2
185,564 + -0.3
185,565 - -1.7
185,567 - +1.4
185,568 + +0.3
185,570 - -0.7
185,578 + -0.6
185,578 + +0.5
185,593 - +0.8
185,593 - +1.0
185,593 - -0.8
185,594 + -0.6
185,596 + +0.7
185,601 + -1.1
185,649 - +0.9
185,661 - -0.5
185,661 - -0.1
185,662 + +1.1
185,662 + +1.9
185,666 + +1.1
185,673 - +1.7
185,677 - +0.2
185,679 + +0.5
185,696 + +1.1
185,704 + +1.2
185,712 - -1.9
185,713 + -0.7
185,727 + +1.4
185,744 - -1.1
185,763 + +0.8
185,786 - +0.5
185,816 + +1.1
185,830 + +0.1
185,833 - -0.0
185,852 - +0.1
185,855 + +0.6
185,877 + +1.6
185,885 + -0.6
185,888 + -0.4
185,888 + -0.6
185,912 - +0.3
185,920 + -0.5
185,948 + -0.8
185,963 - -2.0
185,978 - +1.0
185,979 + -1.1
185,989 + -1.2
186,026 + -1.0
186,029 + -0.4
186,122 + -0.4
186,164 - -1.2
186,196 + -2.5
186,301 - 11990 mRNA_3622 0.12 -0.3
186,328 - 11990 mRNA_3622 0.13 -3.5
186,349 - 11990 mRNA_3622 0.14 -1.7
186,378 - 11990 mRNA_3622 0.15 -2.2
186,538 + 11990 mRNA_3622 0.22 -2.6
186,540 + 11990 mRNA_3622 0.22 -0.2
186,573 - 11990 mRNA_3622 0.23 -0.5
186,579 - 11990 mRNA_3622 0.24 -3.2
186,599 + 11990 mRNA_3622 0.25 -4.0
186,622 - 11990 mRNA_3622 0.26 -1.5
186,645 - 11990 mRNA_3622 0.27 +0.8
186,776 + 11990 mRNA_3622 0.32 -0.8
186,789 + 11990 mRNA_3622 0.33 -0.4
186,809 - 11990 mRNA_3622 0.33 -1.8
186,843 + 11990 mRNA_3622 0.35 -1.1
186,861 + 11990 mRNA_3622 0.36 +0.3
186,967 + 11990 mRNA_3622 0.40 +0.1
187,087 + 11990 mRNA_3622 0.45 +1.2
187,242 + 11990 mRNA_3622 0.52 -0.3
187,254 + 11990 mRNA_3622 0.52 -1.5
187,358 + 11990 mRNA_3622 0.57 -1.0
187,371 + 11990 mRNA_3622 0.57 -2.3
187,614 - 11990 mRNA_3622 0.68 -2.2
187,650 + 11990 mRNA_3622 0.69 -1.5
187,773 + 11990 mRNA_3622 0.74 -2.2
187,802 - 11990 mRNA_3622 0.75 -1.5
187,806 - 11990 mRNA_3622 0.76 -1.0
187,845 + 11990 mRNA_3622 0.77 -1.4
187,908 - 11990 mRNA_3622 0.80 -1.5
187,911 + 11990 mRNA_3622 0.80 -0.9
188,228 - -3.8
188,425 + -0.9
188,463 + -0.6
188,486 - -1.8
188,500 + -2.1
188,508 - -1.9
188,523 + -2.4
188,546 + -0.1
188,548 + -0.1
188,549 - -2.0
188,552 + +0.4
188,553 + -1.7
188,556 - -2.6
188,557 + -1.1
188,559 - -1.0
188,570 - -1.3
188,570 - +0.1
188,572 + +0.7
188,576 - -1.1
188,591 + -1.5
188,592 - -1.7
188,593 + +0.2
188,605 + +1.0
188,612 + -0.2
188,704 - -0.5
188,705 - -0.8
188,708 - -0.5
188,709 + -0.7
188,717 + -0.1
188,718 - -1.6
188,721 + -0.5
188,721 + -0.7
188,724 - +0.5
188,725 - -1.9
188,725 - -1.0
188,730 - +0.3
188,731 + +1.7
188,732 + -0.3
188,738 + -0.3
188,749 - +1.0
188,753 + +0.8
188,782 - +0.1
188,782 - +0.9
188,784 - -0.1
188,786 + +0.3
188,791 - +0.3
188,791 + -0.5
188,803 - -0.6
188,805 - -0.1
188,809 - +0.4
188,814 - +3.0
188,815 - +0.1
188,815 - -2.6
188,816 - -0.7
188,816 - -0.2
188,816 + +1.3
188,824 + -1.6
188,831 - +0.2
188,833 + +0.8
188,836 + -0.0
188,837 - +0.5
188,841 + -0.4
188,841 - +1.3
188,844 + +0.6
188,846 + -1.0
188,862 - -0.3
188,864 + +0.6
188,872 + +1.1
188,875 - +0.1
188,876 + +0.3
188,878 + -1.1
188,887 - +1.2
188,896 - +0.3
188,896 - +0.2
188,897 - +0.0
188,903 + +0.2
188,903 + -0.9
188,906 + +0.6
188,907 + +0.4
188,908 - +0.2
188,914 + -0.1
188,921 - -0.3
188,922 - +0.7
188,934 - +0.7
188,936 - -0.1
188,936 - -1.2
188,942 - +0.1
188,943 - +0.9
188,951 - +0.2
188,962 - -1.6
189,019 + -0.6
189,075 - +0.5
189,080 - -0.2
189,082 - -2.1
189,082 + -1.0
189,100 - -0.5
189,102 + -1.5
189,106 - -0.3
189,119 + -2.5
189,119 + +0.7
189,119 - -0.0
189,124 - +0.6
189,125 + -0.4
189,125 + -0.2
189,127 + -0.8
189,132 + -0.0
189,134 + -0.2
189,158 - +0.3
189,171 + +1.1
189,171 - -0.2
189,184 - -0.9
189,186 - -0.2
189,186 - +1.1
189,187 + +0.2
189,189 + +0.1
189,190 + -0.0
189,221 + +1.5
189,222 - -0.2
189,223 + -1.3
189,232 + -0.8
189,252 - +0.5
189,260 - +0.3
189,272 - -2.0
189,292 - -1.2
189,296 - +2.1
189,304 - +0.1
189,371 + +0.4

Or see this region's nucleotide sequence