Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3665

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12032 and 12033 are separated by 105 nucleotides mRNA_3664: 12032 - K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26, at 290,844 to 292,094 12032 mRNA_3665: 12033 - HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865,SUPERFAMILY--SSF144083, at 292,200 to 295,663 12033

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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291,888 - 12032 mRNA_3664 0.83 -0.6
292,165 - +0.4
292,166 + +0.1
292,187 - +0.6
292,192 - -0.5
292,324 + +1.4
292,326 - -0.2
292,451 - +0.6
292,488 + +0.3
292,612 - 12033 mRNA_3665 0.12 -0.7
292,756 + 12033 mRNA_3665 0.16 +0.5
292,888 + 12033 mRNA_3665 0.20 -1.1
292,932 + 12033 mRNA_3665 0.21 -0.7
293,056 - 12033 mRNA_3665 0.25 +0.2
293,470 - 12033 mRNA_3665 0.37 -0.7
293,492 - 12033 mRNA_3665 0.37 -1.1
293,574 - 12033 mRNA_3665 0.40 +2.0
293,642 + 12033 mRNA_3665 0.42 -0.5
293,799 + 12033 mRNA_3665 0.46 +0.0
294,359 + 12033 mRNA_3665 0.62 -0.1
294,646 - 12033 mRNA_3665 0.71 -1.2
294,951 + 12033 mRNA_3665 0.79 +0.4
295,234 - 12033 mRNA_3665 0.88 -0.9
295,271 - 12033 mRNA_3665 0.89 +1.5
295,583 + +1.3
295,671 + +0.8
295,672 - +0.4
295,711 - +1.3
295,715 - +0.1
295,801 + -1.4
295,802 - +1.2
295,803 + -0.7
295,806 - +0.5
295,818 - +0.0
295,823 + +0.7
295,825 - +0.0
295,829 - -0.1
295,830 - +1.4
295,850 + +1.3
295,853 - +0.0
295,861 - +0.9
295,866 + +0.1
295,974 - -0.7
295,977 - -0.0
295,980 - -0.4
295,990 - +0.9
295,997 - -0.5
295,999 - -0.3
296,001 - -2.0
296,004 - +0.2
296,011 + +0.2
296,012 - +0.6
296,025 + -0.7
296,137 - +1.6
296,144 + +1.5
296,148 - +1.2
296,166 - +0.2
296,173 + +0.4
296,297 - +1.0
296,316 + -0.8
296,319 + -0.2
296,431 - +1.6
296,610 - +1.3
296,612 - +2.1
296,626 + +2.5

Or see this region's nucleotide sequence