Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3666

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12034 and 12035 are separated by 233 nucleotides mRNA_3666: 12034 - K16055 TPS trehalose 6-phosphate synthase/phosphatase, at 297,311 to 299,921 12034 mRNA_3667: 12035 - KOG3455 Predicted membrane protein, at 300,155 to 301,036 12035

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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296,316 + -0.8
296,319 + -0.2
296,431 - +1.6
296,610 - +1.3
296,612 - +2.1
296,626 + +2.5
296,768 - +1.5
296,781 + +1.1
296,781 + +1.2
296,912 + +1.5
296,912 + +1.2
296,941 + -0.3
297,186 - +3.1
297,354 + -0.1
297,917 - 12034 mRNA_3666 0.23 +1.6
298,091 - 12034 mRNA_3666 0.30 -0.7
298,368 - 12034 mRNA_3666 0.40 +2.1
299,114 + 12034 mRNA_3666 0.69 -2.4
299,817 + -0.3
300,079 + -0.6

Or see this region's nucleotide sequence