Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3670

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12037 and 12038 are separated by 170 nucleotides12038 and 12039 are separated by 314 nucleotides mRNA_3669: 12037 - KOG1756 Histone 2A, at 305,841 to 306,858 12037 mRNA_3670: 12038 - HMMPfam-GRIP-related Arf-binding domain-PF10375,ProSiteProfiles-GRIP domain profile.-PS50913, at 307,029 to 308,993 12038 mRNA_3671: 12039 - K07562 NMD3 nonsense-mediated mRNA decay protein 3, at 309,308 to 311,181 12039

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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306,422 - 12037 mRNA_3669 0.57 -0.1
307,360 - 12038 mRNA_3670 0.17 +1.1
308,872 + +0.3
309,046 - -0.2
309,047 - -0.2

Or see this region's nucleotide sequence