Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3687

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12054 and 12055 are separated by 423 nucleotides12055 and 12056 are separated by 160 nucleotides mRNA_3686: 12054 - SUPERFAMILY--SSF54695, at 348,229 to 349,499 12054 mRNA_3687: 12055 - K14837 NOP12 nucleolar protein 12, at 349,923 to 352,122 12055 mRNA_3688: 12056 - KOG4285 Mitotic phosphoprotein, at 352,283 to 353,789 12056

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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349,123 + 12054 mRNA_3686 0.70 -0.7
349,149 - 12054 mRNA_3686 0.72 -0.1
349,237 + 12054 mRNA_3686 0.79 +0.7
349,384 + -0.4
349,400 - -0.3
349,412 - -0.1
349,412 - +0.1
349,415 - +0.3
349,417 + +0.2
349,417 + -0.0
349,417 + -2.3
349,430 - +0.5
349,539 + +0.3
349,556 - -0.8
349,562 + +1.4
349,567 - +0.3
349,569 - +1.0
349,580 + -0.0
349,590 + +0.8
349,604 + +0.5
349,605 - +0.9
349,634 + -0.1
349,656 - -0.8
349,751 + +0.1
349,867 + +0.1
349,883 + -0.3
349,889 + +1.4
350,619 + 12055 mRNA_3687 0.32 +0.9
351,041 + 12055 mRNA_3687 0.51 +0.7
351,489 - 12055 mRNA_3687 0.71 +1.6
351,950 + +0.4
352,197 - +1.1
352,213 - -1.1
352,228 + -1.3
352,407 + -0.6
352,533 - 12056 mRNA_3688 0.17 -0.2
352,671 - 12056 mRNA_3688 0.26 +0.9
352,798 + 12056 mRNA_3688 0.34 -0.5

Or see this region's nucleotide sequence