Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3691

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12059 and 12060 are separated by 259 nucleotides mRNA_3691: 12059 - K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8, at 366,206 to 370,520 12059 mRNA_3692: 12060 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 370,780 to 372,675 12060

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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365,218 - +0.4
365,516 + -0.2
365,522 - -0.5
365,529 - +1.9
365,535 + -0.1
365,538 + -0.8
365,539 - -0.8
365,822 - +0.2
365,824 - +0.1
365,831 - +0.1
365,838 + -0.6
365,843 + +0.6
365,844 - +1.5
365,847 + -0.3
365,974 - +2.3
366,115 + -0.4
366,120 - -0.5
366,124 - -0.7
366,137 + -1.5
366,151 - +0.3
367,416 - 12059 mRNA_3691 0.28 +1.0
368,783 + 12059 mRNA_3691 0.60 -2.1
370,577 - +0.3
370,582 + +2.0
370,997 + 12060 mRNA_3692 0.11 +1.2
371,096 - 12060 mRNA_3692 0.17 +1.7

Or see this region's nucleotide sequence