Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3722

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12089 and 12090 are separated by 430 nucleotides12090 and 12091 are separated by 319 nucleotides mRNA_3721: 12089 - K14544 UTP22, NOL6 U3 small nucleolar RNA-associated protein 22, at 428,760 to 433,033 12089 mRNA_3722: 12090 - K11251 H2A histone H2A, at 433,464 to 434,074 12090 mRNA_3723: 12091 - K11252 H2B histone H2B, at 434,394 to 435,035 12091

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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433,139 - +0.2
433,186 + -0.7
433,267 + -0.3
433,551 + 12090 mRNA_3722 0.14 -0.1
433,741 + 12090 mRNA_3722 0.45 +0.3
433,869 + 12090 mRNA_3722 0.66 -0.1
433,880 - 12090 mRNA_3722 0.68 -0.7
434,155 - -0.1
434,169 - +0.3
434,173 + +1.4
434,178 + +0.5
434,180 + -0.1
434,182 - +1.4
434,183 + -0.1
434,239 - -0.6
434,244 + +1.9
434,289 + +0.3
434,297 + -1.0
434,303 - -0.5
434,316 + -1.3
434,321 - +0.7
434,322 - -0.8
434,336 - -0.4
434,438 - -0.4
434,444 - -1.0
434,452 + -0.4

Or see this region's nucleotide sequence