Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3730

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3730: 12098 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 446,809 to 447,756 12098

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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445,960 + -0.5
446,099 - +0.1
446,191 - +1.8
446,209 - +3.1
446,239 + -0.6
446,395 + +1.0
446,398 - +2.7
446,401 - +2.2
446,525 - +1.3
446,530 + +0.5
446,533 - -0.3
446,537 + +0.9
446,547 - +0.4
446,548 + +1.9
446,548 + -0.4
446,549 + +0.4
446,550 + -0.2
446,551 - +1.5
446,554 + -0.1
446,554 + -0.2
446,554 - +0.2
446,559 - +1.3
446,559 - -0.4
446,561 + +1.3
446,562 + +0.1
446,563 + +0.2
446,563 - +0.7
446,570 + -1.4
446,572 + +2.4
446,572 + +0.0
446,581 - -0.7
446,601 + +0.1
446,622 + +2.4
446,632 + -2.7
446,640 - +0.2
446,765 - +0.8
446,768 + +0.5
446,769 + -0.6
446,774 - +0.7
446,783 - +1.2
446,784 + +0.3
447,792 + -0.1
447,946 - +0.7
448,229 + -0.5
448,244 - +1.9
448,533 + +0.1

Or see this region's nucleotide sequence