Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3738

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12105 and 12106 are separated by 258 nucleotides12106 and 12107 are separated by 533 nucleotides mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464,797 to 466,425 12105 mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466,684 to 467,899 12106 mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585 12107

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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466,095 - 12105 mRNA_3737 0.80 +0.1
466,341 + -0.8
466,356 - +0.0
466,379 + +0.0
466,470 - +0.0
466,619 - +0.3
466,622 - -0.1
466,622 - +0.9
466,628 - -0.8
466,636 - +0.6
466,646 - +0.6
466,658 - +0.0
467,764 - 12106 mRNA_3738 0.89 +0.3
467,987 + -2.3
468,112 - +0.2
468,122 + +0.1
468,255 + +0.8
468,416 - +1.5
468,428 - -2.1
468,507 - +0.4
468,532 + +0.5
468,535 - +0.8
468,539 - +1.4
468,694 + 12107 mRNA_3739 0.23 +1.1

Or see this region's nucleotide sequence