Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3740

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12107 and 12108 are separated by 313 nucleotides12108 and 12109 overlap by 8 nucleotides mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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469,126 + 12107 mRNA_3739 0.60 +0.8
469,139 + 12107 mRNA_3739 0.61 +0.8
469,269 - 12107 mRNA_3739 0.73 -0.4
469,290 + 12107 mRNA_3739 0.74 +0.8
469,543 + -0.3
469,589 - +0.1
469,597 + -2.2
469,652 + -0.1
469,722 + -0.7
469,724 - +1.5
469,742 + +0.0
469,742 + -0.5
469,742 + -0.1
469,753 + +0.6
469,823 + +0.2
469,825 + -0.4
469,849 - -0.2
469,877 + -0.4
469,878 + -0.5
469,881 - +0.9
469,881 - +1.5
469,892 + -1.1
469,895 + -0.3
469,897 + -0.4
469,939 + -1.9
469,962 - 12108 mRNA_3740 0.14 -0.8
469,963 - 12108 mRNA_3740 0.14 +0.4
469,963 - 12108 mRNA_3740 0.14 +0.4
469,965 + 12108 mRNA_3740 0.15 +0.0
469,965 - 12108 mRNA_3740 0.15 +0.2
469,967 - 12108 mRNA_3740 0.15 +1.1
469,968 + 12108 mRNA_3740 0.15 -2.7
469,968 - 12108 mRNA_3740 0.15 +0.3
469,970 + 12108 mRNA_3740 0.16 +0.6
469,984 - 12108 mRNA_3740 0.19 +0.7
469,998 + 12108 mRNA_3740 0.22 +0.6
470,000 + 12108 mRNA_3740 0.22 -0.3
470,002 - 12108 mRNA_3740 0.23 +0.2
470,002 - 12108 mRNA_3740 0.23 +0.4
470,018 - 12108 mRNA_3740 0.27 +2.0
470,041 + 12108 mRNA_3740 0.32 +0.1
470,052 - 12108 mRNA_3740 0.34 +0.2
470,064 - 12108 mRNA_3740 0.37 +0.8
470,121 + 12108 mRNA_3740 0.49 -0.1
470,192 + 12108 mRNA_3740 0.65 -2.1
470,250 + 12108 mRNA_3740 0.78 +0.4
470,259 + 12108 mRNA_3740 0.80 +0.5
470,291 + 12108 mRNA_3740 0.87 -0.4
470,325 + -0.6
470,430 - -1.7
470,478 - -0.0
470,716 - 12109 mRNA_3741 0.10 -0.0
470,861 - 12109 mRNA_3741 0.15 +1.3
471,193 + 12109 mRNA_3741 0.24 -0.2
471,334 - 12109 mRNA_3741 0.28 -1.0

Or see this region's nucleotide sequence