Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3770

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12137 and 12138 are separated by 303 nucleotides12138 and 12139 are separated by 968 nucleotides mRNA_3769: 12137 - K10669 TRPT1, TPT1 2'-phosphotransferase, at 541,434 to 542,462 12137 mRNA_3770: 12138 - K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9, at 542,766 to 544,325 12138 mRNA_3771: 12139 - K02866 RP-L10e, RPL10 large subunit ribosomal protein L10e, at 545,294 to 546,306 12139

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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542,541 + +1.1
542,556 + +0.1
542,564 + +0.6
542,854 + +2.1
543,006 + 12138 mRNA_3770 0.15 +0.1
543,397 - 12138 mRNA_3770 0.40 +0.6
543,990 + 12138 mRNA_3770 0.78 -0.1
544,146 - 12138 mRNA_3770 0.88 -0.0
544,292 + -0.2
544,294 + +0.7
544,298 - +0.7
544,305 - +0.2
544,440 - -0.1
544,491 - +0.1
544,591 - -0.5
544,594 - -0.3
544,594 - +0.4
544,594 - +1.1
544,603 - -0.1

Or see this region's nucleotide sequence