Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3775

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12142 and 12143 are separated by 663 nucleotides12143 and 12144 are separated by 292 nucleotides mRNA_3774: 12142 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 551,229 to 552,274 12142 mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552,938 to 553,662 12143 mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553,955 to 556,574 12144

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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552,230 - -0.5
552,402 + -0.8
552,538 - +0.5
552,709 + -0.6
552,819 - +1.8
552,842 - -0.3
553,013 + 12143 mRNA_3775 0.10 -0.2
553,424 + 12143 mRNA_3775 0.67 -0.7
553,575 - 12143 mRNA_3775 0.88 +0.2
553,652 - -1.0
553,754 + -0.2
553,861 - -0.4

Or see this region's nucleotide sequence