Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3777

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12144 and 12145 are separated by 605 nucleotides12145 and 12146 are separated by 450 nucleotides mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553,955 to 556,574 12144 mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557,180 to 558,034 12145 mRNA_3778: 12146 - HMMPfam-Endonuclease V-PF04493, at 558,485 to 559,797 12146

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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556,367 - -1.9
556,513 + -0.8
556,517 - -0.8
556,688 - -0.7
556,810 + -0.1
556,815 - +1.0
556,818 - +0.2
556,827 + -0.4
556,832 - +0.4
556,842 - +0.1
556,880 - +0.3
556,928 - +0.5
556,973 - +2.2
556,978 - +0.3
556,980 - -0.1
556,981 - +2.5
556,983 - -0.0
557,005 - +1.2
557,007 + -0.3
557,017 + -0.5
557,027 + -0.2
557,041 + +2.1
557,322 - 12145 mRNA_3777 0.17 -0.7
557,419 - 12145 mRNA_3777 0.28 -0.1
557,455 - 12145 mRNA_3777 0.32 +2.0
557,564 + 12145 mRNA_3777 0.45 +0.9
557,597 + 12145 mRNA_3777 0.49 +0.3
558,032 - +2.6
558,305 + -0.2
558,306 - +1.1
558,335 + +0.1
558,442 - +0.6
558,459 + -1.0
558,607 - +0.6
558,917 + 12146 mRNA_3778 0.33 -1.4

Or see this region's nucleotide sequence