Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3801

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12168 and 12169 are separated by 132 nucleotides12169 and 12170 are separated by 186 nucleotides mRNA_3800: 12168 - K14715 SLC39A9, ZIP9 solute carrier family 39 (zinc transporter), member 9, at 606,209 to 607,581 12168 mRNA_3801: 12169 - K12591 RRP6, EXOSC10 exosome complex exonuclease RRP6, at 607,714 to 610,860 12169 mRNA_3802: 12170 - K01939 purA, ADSS adenylosuccinate synthase, at 611,047 to 612,951 12170

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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607,068 - 12168 mRNA_3800 0.63 -2.6
607,373 - 12168 mRNA_3800 0.85 -0.3
607,636 - -0.4
609,954 - 12169 mRNA_3801 0.71 +1.5
610,036 + 12169 mRNA_3801 0.74 -1.7
610,310 + 12169 mRNA_3801 0.82 +0.7
610,430 + 12169 mRNA_3801 0.86 -0.2
610,610 - -0.9
610,610 - +1.3
610,619 + +0.5

Or see this region's nucleotide sequence